遇见数据集

Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera

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Zenodo2021-10-12 更新2026-05-25 收录
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The dataset contains Supplementary Files from "Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera": <em>Odynerus spinipes</em> draft genome assembly (ODSP_platanus.1.2.4.n0.s20.fa) Soft-masked version of the draft genome (ODSP_platanus.1.2.4.n0.s20.fasta.softmasked) Gene models of predicted protein-coding genes (ODSP_platanus.1.2.4.n0.s20_BRAKER1.9_annot.gff) mRNA file of predicted gene protein-coding genes (mRNA_ODSP_platanus.1.2.4.n0.s20.fa) Protein file of predicted gene protein-coding genes (ODSP_BRAKER_augustus_aa.fa) Deseq2 results table (age class comparison) (AGE_DESEQ2_sign_results_ordered.xlsx) EdgeR results table (age class comparison) (AGE_EdgeR_lrt_sign_results_ordered.xlsx) qRT-PCR raw values (Expression_knock_downs_all_Apis_ids.xlsx) Cuticular hydrocarbon compound abundances in <em>Apis mellifera</em> samples treated with dsRNA (CHCs_abundance_knock_downs_Apis_ids.xlsx) Nucleotide sequence encoding green fluorescent protein (GFP) (Primer_GFP_sequence_used_Negative_contro_RNAi.doc) Nucleotide sequence of candidate genes used for probe and dsRNA synthesis (Sequences_ISH_dsRNA_Apis_ids.fa)

本数据集包含论文《胡蜂种内表皮碳氢化合物二态性揭示膜翅目昆虫碳氢化合物生物合成基因》(原英文标题:Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera)的补充文件,具体如下: 1. 刺棘泥蜂(*Odynerus spinipes*)草图基因组组装(draft genome assembly)文件:ODSP_platanus.1.2.4.n0.s20.fa 2. 刺棘泥蜂草图基因组软屏蔽版本(soft-masked version of the draft genome):ODSP_platanus.1.2.4.n0.s20.fasta.softmasked 3. 预测蛋白质编码基因的基因模型(gene models of predicted protein-coding genes)文件:ODSP_platanus.1.2.4.n0.s20_BRAKER1.9_annot.gff 4. 预测蛋白质编码基因的mRNA文件(mRNA file of predicted protein-coding genes):mRNA_ODSP_platanus.1.2.4.n0.s20.fa 5. 预测蛋白质编码基因的蛋白质序列文件(Protein file of predicted gene protein-coding genes):ODSP_BRAKER_augustus_aa.fa 6. 年龄组比较的DESeq2差异分析结果表(Deseq2 results table (age class comparison)):AGE_DESEQ2_sign_results_ordered.xlsx 7. 年龄组比较的EdgeR差异分析结果表(EdgeR results table (age class comparison)):AGE_EdgeR_lrt_sign_results_ordered.xlsx 8. 实时定量逆转录聚合酶链式反应(quantitative Real-Time PCR, qRT-PCR)原始值文件(qRT-PCR raw values):Expression_knock_downs_all_Apis_ids.xlsx 9. 经双链RNA(double-stranded RNA, dsRNA)处理的西方蜜蜂(*Apis mellifera*)样本的表皮碳氢化合物(Cuticular Hydrocarbons, CHCs)丰度文件:CHCs_abundance_knock_downs_Apis_ids.xlsx 10. 用于RNA干扰负对照的绿色荧光蛋白(green fluorescent protein, GFP)编码核苷酸序列(Nucleotide sequence encoding green fluorescent protein (GFP))文件:Primer_GFP_sequence_used_Negative_contro_RNAi.doc 11. 用于探针与双链RNA(dsRNA)合成的候选基因核苷酸序列(Nucleotide sequence of candidate genes used for probe and dsRNA synthesis)文件:Sequences_ISH_dsRNA_Apis_ids.fa

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Zenodo
创建时间:
2021-10-12
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