Breakdown of pan-platyhelminth <i>E. granulosus</i> genes.
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https://figshare.com/articles/dataset/_Breakdown_of_pan_platyhelminth_E_granulosus_genes_/205293
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Pan-Platyhelminth genes were defined as Platyhelminth specific sequences with significant BLAST scores (bit score ≥50) to four or more other platyhelminth EST datasets. The highest BLAST bit scores for each of 11 platyhelminth datasets is shown (consider that a bit score of 50 is roughly equivalent to an e-value of e-5, 100∼e-8, 200∼e-20, etc): Em - Echinococcus multilocularis; Ts - Taenia solium; Cs - Clonorchis sinesis; Fh - Fasciola hepatica; Ov - Opisthorchis viverrini; Sj - Schistosoma japonicum; Sm - Schistosoma mansoni; Dj - Dugesia japonica; Dr - Dugesia ryukuensis; ScM - Schmidtea mediterranea; Ml - Macrostomum lignano. Clusters with predicted secretory leaders (bold) or signal anchors (underlined) are indicated.
泛扁形动物基因(Pan-Platyhelminth genes)被定义为:与至少4个其他扁形动物表达序列标签(Expressed Sequence Tag,EST)数据集具有显著BLAST(Basic Local Alignment Search Tool)比对得分(比特得分≥50)的扁形动物特异性序列。本次展示了11个扁形动物数据集各自的最高BLAST比特得分,需注意:比特得分50大致对应e值为e⁻⁵,得分100对应e⁻⁸,得分200对应e⁻²⁰,以此类推:
Em——多房棘球绦虫(Echinococcus multilocularis);
Ts——猪带绦虫(Taenia solium);
Cs——华支睾吸虫(Clonorchis sinesis);
Fh——肝片吸虫(Fasciola hepatica);
Ov——麝猫后睾吸虫(Opisthorchis viverrini);
Sj——日本血吸虫(Schistosoma japonicum);
Sm——曼氏血吸虫(Schistosoma mansoni);
Dj——日本三角涡虫(Dugesia japonica);
Dr——琉球三角涡虫(Dugesia ryukuensis);
ScM——地中海施密德涡虫(Schmidtea mediterranea);
Ml——林氏巨口涡虫(Macrostomum lignano)。
本次标注了带有预测分泌前导序列(加粗显示)或信号锚定序列(下划线显示)的基因簇。
创建时间:
2012-11-29



