Supplemental Material for Osorio-Guarín, Berdugo-Cely et al., 2020

Table S1 contains the list of the accessions used. The phenotypic data is provided in Table S2. Table S3 contains a summary of the statistics for the sequenced data per individual. The candidate genes under positive selection per chromosome are provided in Table S4. Files S5 and S6 include the vcf files of the SNPs discovered for Criollo and Matina, respectively. Figure S1 exhibits an <i>in silico</i> analysis of the restriction enzymes. Figure S2 presents the number of sequenced reads of each accession. Figure S3 shows the correlation among traits of the entire population. Figure S4 contains the QQ-plots for each evaluated trait. The R script for the detection of common outliers in selective sweeps is available at http://pop-gen.eu/wordpress/wp-content/uploads/2013/12/combined_analysis.zip. The raw sequencing data of the reference samples were downloaded from the BioProject PRJNA486011 (Cornejo <i>et al.</i> 2018), via NCBI. Supplemental material is available at Figshare: https://gsajournals.figshare.com/s/165b88f523482900eb79.<br>

表S1列出了所用的种质编号（accessions）。表S2提供表型数据。表S3包含每个个体测序数据的统计摘要。表S4提供每条染色体上受正选择的候选基因。文件S5和S6分别包含Criollo和Matina群体中发现的单核苷酸多态性（SNP）的VCF文件。图S1展示了限制性内切酶的计算机模拟（in silico）分析。图S2呈现每个种质编号的测序读段数量。图S3显示整个群体各性状间的相关性。图S4包含每个评估性状的QQ图。用于检测选择清除中常见异常值的R脚本可从以下链接获取：http://pop-gen.eu/wordpress/wp-content/uploads/2013/12/combined_analysis.zip。参考样本的原始测序数据通过NCBI从生物项目（BioProject）PRJNA486011获取（Cornejo等，2018）。补充材料可在Figshare平台获取：https://gsajournals.figshare.com/s/165b88f523482900eb79.<br>