Additional file 4 of A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine

Additional file 4: Table S2. Details on the SNPs showing significant associations (FDR ≤ 0.05) in the GWAS across autosomal chromosomes and unplaced scaffolds. Chr = chromosome; BP = base pairs (location); Beta = additive effect; MAF = minor allele frequency; FDR = false discovery rate; HABN = head abnormalities; MT_5 = percentage of motile spermatozoa at 5 min; MT_90 = percentage of motile spermatozoa at 90 min; NABN = neck abnormalities; PDROP = proximal droplets; R_ACRO = ratio abnormal acrosomes.

附加文件4：表S2。本表格收录了全基因组关联分析（Genome-wide Association Study, GWAS）中，在常染色体及未定位支架序列上呈现显著关联（错误发现率（false discovery rate, FDR）≤0.05）的单核苷酸多态性（Single Nucleotide Polymorphism, SNP）相关详情。各缩写的具体含义如下：Chr=染色体（chromosome）；BP=碱基对（base pairs，位置信息）；Beta=加性效应；MAF=次要等位基因频率（minor allele frequency）；HABN=头部畸形（head abnormalities）；MT_5=5分钟时活动精子占比；MT_90=90分钟时活动精子占比；NABN=颈部畸形（neck abnormalities）；PDROP=近端胞质滴（proximal droplets）；R_ACRO=异常顶体比率（ratio abnormal acrosomes）。