Software and database resource mentions across the whole of PubMed Central full-text articles

This is a compressed .sql.gz file of a MySQL database dump. The table contains the automatically extracted mentions of database and software resource names as extracted by bioNerDS across the full sub-set of open-access full-text PubMed Central articles. Each matched resource is identified by name, text offsets and "normalised" name, and also includes details of the rules from which the name was matched. This dataset is one of the primary research contributions of my PhD work, and a paper currently being finalised for submission to PLoS Computational Biology.

本数据集为MySQL数据库备份文件经压缩后的.sql.gz格式文件。该数据表收录了由bioNerDS在全部开放获取全文PubMed Central文章的完整子集范围内自动提取得到的数据库与软件资源名称提及内容。每一个匹配到的资源均通过名称、文本偏移量与标准化（normalised）名称进行标识，同时附带该资源名称所匹配的规则细节。本数据集为本人博士研究的核心学术贡献之一，相关研究论文目前已完成定稿，即将提交至《PLoS计算生物学（PLoS Computational Biology）》期刊。