The panzootic potential of SARS-CoV-2

Our dataset collection comprises files containing tree files and character matrices, serving as invaluable resources for researchers aiming to reproduce or extend the findings presented in our manuscript. panzootic_virus_metadata_lineage3.csv - metadata to make the trees (Figure 2) panzootic_virus.fa - the virus alignment file (Figure 2) panzootic_virus_rooted.treefile - the virus tree file (Figure 2) AA_gisaid_revANNA-ADR_05042022finalAL.xlsx - dataset for generation Figure 3 COVID_ToL,csv - metadata for mammal tree and trait matrix COVID_ToL_Infection.csv - metadata for mammal tree and trait matrix COVID_ToL_ACE2.csv - metadata for mammal tree and trait matrix COVID_ToL_CAT.csv - metadata for cat tree and trait matrix TopoFree_ND_MCC_SpeciesTree.rdata - Species tree file TopoFree_ND_MCC_SpeciesTree_ace_ACE2_ARD.rdata - Figure S3 TopoFree_ND_MCC_SpeciesTree_simmap_ACE2_ARD.rdata - Figure S2 TopoFree_ND_MCC_Famtree_V2.rdata - Family tree file TopoFree_ND_MCC_FamTree_V2_ace_ACE2.rdata - Figure S4 TopoFree_ND_MCC_Famtree_V2_simmap_ACE2.rdata - Figure 4 TopoFree_ND_CatTree.rdata - Cat tree file TopoFree_ND_MCC_CatTree_ace_Infection_ARD.rdata - Figure S6 TopoFree_ND_MCC_CatTree_simmap_Infection_ARD.rdata - Figure S5

本数据集合集涵盖系统发育树文件与字符矩阵文件，可为旨在复现或拓展本文手稿所载研究成果的科研人员提供宝贵资源。各文件及对应说明如下：
panzootic_virus_metadata_lineage3.csv：用于构建系统发育树（图2）的元数据文件
panzootic_virus.fa：病毒序列比对文件（对应图2）
panzootic_virus_rooted.treefile：病毒系统发育树文件（对应图2）
AA_gisaid_revANNA-ADR_05042022finalAL.xlsx：用于生成图3的数据集文件
COVID_ToL,csv：哺乳动物系统发育树及性状矩阵对应的元数据文件
COVID_ToL_Infection.csv：哺乳动物系统发育树及性状矩阵对应的元数据文件
COVID_ToL_ACE2.csv：哺乳动物系统发育树及性状矩阵对应的元数据文件
COVID_ToL_CAT.csv：猫科动物系统发育树及性状矩阵对应的元数据文件
TopoFree_ND_MCC_SpeciesTree.rdata：物种类群系统发育树文件
TopoFree_ND_MCC_SpeciesTree_ace_ACE2_ARD.rdata：对应补充图S3的文件
TopoFree_ND_MCC_SpeciesTree_simmap_ACE2_ARD.rdata：对应补充图S2的文件
TopoFree_ND_MCC_Famtree_V2.rdata：科级系统发育树文件
TopoFree_ND_MCC_FamTree_V2_ace_ACE2.rdata：对应补充图S4的文件
TopoFree_ND_MCC_FamTree_V2_simmap_ACE2.rdata：对应图4的文件
TopoFree_ND_CatTree.rdata：猫科动物系统发育树文件
TopoFree_ND_MCC_CatTree_ace_Infection_ARD.rdata：对应补充图S6的文件
TopoFree_ND_MCC_CatTree_simmap_Infection_ARD.rdata：对应补充图S5的文件