kaken2 database of bat genomes for host decontamination
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kraken2 database of bat genomes (chromosomes and mitochondrial sequences only). Used in Nephele pipelines for decontamination of metagenomic datasets from bat host reads. Database is also supplemented with of human genome and is created using no masking Contained assemblies of 9 bat genomes Organism Name Assembly Name Assembly Accession Rhinolophus ferrumequinum mRhiFer1_v1.p GCF_004115265.2 Desmodus rotundus HLdesRot8A.1 GCF_022682495.2 Eptesicus fuscus DD_ASM_mEF_20220401 GCF_027574615.1 Rhinolophus sinicus ASM3656204v1 GCF_036562045.2 Phyllostomus discolor mPhyDis1.pri.v3 GCF_004126475.2 Myotis daubentonii mMyoDau2.1 GCF_963259705.1 Saccopteryx bilineata mSacBil1_pri_phased_curated GCF_036850765.1 Saccopteryx leptura mSacLep1_pri_phased_curated GCF_036850995.1 Pipistrellus nathusii mPipNat.pri GCA_963693515.1
仅包含染色体与线粒体序列的Kraken2(Kraken2)蝙蝠基因组数据库。该数据库应用于Nephele分析流程中,用于去除宏基因组数据集内的蝙蝠宿主读段污染;数据库额外补充了人类基因组,构建过程未进行序列屏蔽。 该数据库包含9个蝙蝠基因组的组装序列: 物种名称 组装名称 组装登录号 Rhinolophus ferrumequinum(大菊头蝠) mRhiFer1_v1.p GCF_004115265.2 Desmodus rotundus(普通吸血蝠) HLdesRot8A.1 GCF_022682495.2 Eptesicus fuscus(大棕蝠) DD_ASM_mEF_20220401 GCF_027574615.1 Rhinolophus sinicus(中华菊头蝠) ASM3656204v1 GCF_036562045.2 Phyllostomus discolor(双色叶口蝠) mPhyDis1.pri.v3 GCF_004126475.2 Myotis daubentonii(道氏鼠耳蝠) mMyoDau2.1 GCF_963259705.1 Saccopteryx bilineata(白线囊翼蝠) mSacBil1_pri_phased_curated GCF_036850765.1 Saccopteryx leptura(细尾囊翼蝠) mSacLep1_pri_phased_curated GCF_036850995.1 Pipistrellus nathusii(纳氏伏翼) mPipNat.pri GCA_963693515.1



