Zhao et al. Ranunculus Dataset.zip

Data for the paper Zhao et al., 'RNA-seq of Ranunculus sceleratus and identifying orthologous genes of four Ranunculus species'. Submitted to Frontiers in Plant Sciences.

File 'Unigenes of Ranunculus sceleratus.fa' includes all the unigenes assembled using program Trinity and TGICL.

Folder '1. Phylogenetic analyses' lists the ITS sequences and cpDNA sequences of four Ranunculus species, which was used for phylogenetic analyses.

Folder '2. All the orthologous clusters' lists sequences of the 3455 putative orthologous clusters identified using program OrthoMCL.

Folder '3. Orthologous clusters after filters' lists sequences of the 884 orthologous clusters after filtering the possible paralogous clusters.

Species name abbreviation:
Rbu = Ranunculus bungei
Rch = R. cantoniensis
Rsc = R. sceleratus
Rta = R. brotherusii

If you have any question, please contact Ling-Yun Chen ([e-mail]).

本数据集对应Zhao等人提交至《Frontiers in Plant Sciences》（植物科学前沿）的论文《石龙芮的RNA测序及四种毛茛属物种同源基因的鉴定》。
文件"Unigenes of Ranunculus sceleratus.fa"包含了通过Trinity与TGICL程序组装得到的全部单基因簇（unigenes）。
文件夹"1. 系统发育分析"收录了四种毛茛属物种的内部转录间隔区（Internal Transcribed Spacer, ITS）序列与叶绿体DNA（cpDNA）序列，用于系统发育分析。
文件夹"2. 所有同源基因簇"收录了通过OrthoMCL程序鉴定得到的3455个推定同源基因簇的序列。
文件夹"3. 过滤后的同源基因簇"收录了经筛选去除潜在旁系同源基因簇后剩余的884个同源基因簇的序列。
物种名称缩写对照表如下：
Rbu = Ranunculus bungei
Rch = R. cantoniensis
Rsc = R. sceleratus
Rta = R. brotherusii
如有任何疑问，请联系陈凌云（Ling-Yun Chen），邮箱：[e-mail]。