CPL-Gold-Entity-Resolution: annotated entity resolution corpus between publications and executable code for Nextflow workflows

CPL-Gold-Entity-Resolution is an annotated entity resolution corpus between publications and executable code for Nextflow workflows. These annotations are available in the YAML format. This corpus is composed of 39 workflows extracted from CPL-Article (https://doi.org/10.5281/zenodo.20746904) and CPL-Code (https://doi.org/10.5281/zenodo.20746970). 490 potentials cross-model links are represented. Repository organisation This repository contains YAML files. For each workflow, two files are associated: one corresponding to the article and one to the code. Each file includes a list of the bioinformatics tools mentioned, along with their potential links in the associated code and possible alternative tool formulations within the same source. Contact Clémence Sebe, [e-mail] Funding This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.CPL-Gold-Entity-Link 是一款面向 Nextflow 工作流的带标注实体链接语料库（annotated entity linking corpus），用于关联学术出版物与可执行代码。该标注集采用 YAML 格式存储。 该语料库包含从 CPL-Article（https://doi.org/10.5281/zenodo.18526700）与 CPL-Code（https://doi.org/10.5281/zenodo.18526760）中提取的15个工作流，共涵盖190条潜在跨模型链接。 仓库组织结构 本仓库包含 YAML 格式文件。针对每个工作流，均配有两个关联文件：分别对应学术文章与可执行代码。每个文件均列出了所提及的生物信息学工具，及其在关联代码中的潜在链接，以及同一来源中可能存在的工具替代表述。 联系方式 克莱芒斯·塞贝（Clémence Sebe），邮箱：[e-mail] 资助说明 本研究获得法国国家科研署（National Research Agency）在 France 2030 计划下的资助，项目编号为 ANR-22-PESN-0007。