Ribosomal protein database of Pyrococcus horikoshii strain ATCC 700860

This work presents the ribosomal protein database of <i>Pyrococcus horikoshii </i>(strain ATCC 700860). Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.

本研究构建了适用于激烈火球菌（Pyrococcus horikoshii）菌株ATCC 700860的核糖体蛋白数据库。本研究的原始数据源自从UniProt下载的该细菌的注释蛋白质组数据。本研究采用自研的MATLAB核糖体蛋白数据库分析软件，对原始蛋白质组数据文件进行解析，提取该物种所有核糖体蛋白的蛋白名称与氨基酸序列。该数据库还包含计算得到的相关参数，包括残基数目、分子量以及核苷酸序列。综上，本数据库可作为核糖体蛋白质谱指纹图谱用于微生物鉴定，亦可应用于旨在阐明核糖体蛋白生物学全新见解的基础研究。