Inputs & results for "Identifying circular DNA using short-read mapping"

* `inputs`: Contains genome assemblies, annotations, and sample sheets for the Nextflow pipeline * `parasite_species`: Contains the sample sheet and input data for the parasite/related species dataset * `parasitoid_wasps`: Contains the sample sheet and input data for the parasitoid wasp dataset * `results`: Contains filtered BAM and coverage files, figures, and `GenomeInfo`-filtered example files for the parasitoid wasp and parasite/related species datasets * `parasite_species`: * `bam_files`: Contains BAM files with mapped distances >= 1 kb * `coverage_files`: Contains coverage depth files filtered by the BAM files * `insert_filtered_results`: Contains examples of filtered file outputs from the `GenomeInfo` class. The complete set of outputs can be found on Zenodo. * `fig`: Figures generated for the pub. * `parasitoid_wasps`: * `bam_files`: Contains BAM files with mapped distances >= 1 kb * `coverage_files`: Contains coverage depth files filtered by the BAM files * `fig`: Figures generated for the pub. * `hyposoter_didymator_blastx_results`: Contains the manual BLASTx results from the _Hyposoter didymator_ search.`inputs`：包含用于Nextflow流程（Nextflow）的基因组组装结果、注释文件与样本表 * `parasite_species`：包含寄生生物及其近缘物种数据集的样本表与输入数据 * `parasitoid_wasps`：包含寄生蜂数据集的样本表与输入数据 `results`：包含针对寄生蜂与寄生生物及其近缘物种数据集的过滤后BAM文件、覆盖度文件、科研图表，以及经`GenomeInfo`类过滤的示例文件 * `parasite_species`： * `bam_files`：包含比对距离≥1 kb的BAM文件 * `coverage_files`：包含经上述BAM文件过滤得到的覆盖度深度文件 * `insert_filtered_results`：包含`GenomeInfo`类生成的过滤后文件输出示例，完整输出集可在Zenodo平台获取。 * `fig`：用于发表的科研图表 * `parasitoid_wasps`： * `bam_files`：包含比对距离≥1 kb的BAM文件 * `coverage_files`：包含经上述BAM文件过滤得到的覆盖度深度文件 * `fig`：用于发表的科研图表 * `hyposoter_didymator_blastx_results`：包含针对*Hyposoter didymator*的手动BLASTx比对结果。