Jama et al Data from SCNA and gene pathway analysis
收藏DataCite Commons2023-03-30 更新2024-07-13 收录
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https://figshare.le.ac.uk/articles/dataset/Jama_et_al_Data_from_SCNA_and_gene_pathway_analysis/22360534
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资源简介：
An MS Excel file with 12 tabbed sheets 1. SCNA-BAP1: SCNA data from Zhang 2021 of CN segments harbouring the BAP1 gene 2. KEGG gene list: list of KEGG genes for Hippo pathway, Homologous recombination pathway and Non-Homologous End Joining pathway 3. SCNA -HIPPO: SCNA data from Zhang 2021 of CN segments harbouring Hippo pathway genes 4. SCNA-HR: SCNA data from Zhang 2021 of CN segments harbouring HR pathway genes 5. SCNA-NHEJ: SCNA data from Zhang 2021 of CN segments harbouring NHEJ pathway genes 6. TRUNCAL HIPPO: Truncal SCNA changes in Hippo pathway genes according to sample and fusion status 7. TRUNCAL HR: Truncal SCNA changes in HR pathway genes according to sample and fusion status 8. TRUNCAL NHEJ: Truncal SCNA changes in NHEJ pathway genes according to sample and fusion status 9. TRUNCAL + BRANCH HIPPO: SCNA changes in Hippo pathway genes according to sample and fusion status 10. TRUNCAL + BRANCH HR: SCNA changes in HR pathway genes according to sample and fusion status 11. TRUNCAL + BRANCH NHEJ: SCNA changes in NHEJ pathway genes according to sample and fusion status 12. SUMMARY: Two-by-two contingency tables of gene fusion positive/gene fusion negative tumours <br> <br> <br>
本数据集为一份含12个带标签工作表的Microsoft Excel（MS Excel）文件，各工作表详情如下：
1. SCNA-BAP1：来源于Zhang 2021研究的体细胞拷贝数变异（Somatic Copy Number Alteration，SCNA）数据，对应携带BAP1基因的染色体拷贝数片段
2. KEGG基因列表：收录Hippo通路、同源重组（Homologous Recombination，HR）通路与非同源末端连接（Non-Homologous End Joining，NHEJ）通路的KEGG基因集
3. SCNA -HIPPO：来源于Zhang 2021研究的体细胞拷贝数变异（SCNA）数据，对应携带Hippo通路基因的染色体拷贝数片段
4. SCNA-HR：来源于Zhang 2021研究的体细胞拷贝数变异（SCNA）数据，对应携带HR通路基因的染色体拷贝数片段
5. SCNA-NHEJ：来源于Zhang 2021研究的体细胞拷贝数变异（SCNA）数据，对应携带NHEJ通路基因的染色体拷贝数片段
6. TRUNCAL HIPPO：基于样本与基因融合状态的Hippo通路基因躯干克隆体细胞拷贝数变异变化数据
7. TRUNCAL HR：基于样本与基因融合状态的HR通路基因躯干克隆体细胞拷贝数变异变化数据
8. TRUNCAL NHEJ：基于样本与基因融合状态的NHEJ通路基因躯干克隆体细胞拷贝数变异变化数据
9. TRUNCAL + BRANCH HIPPO：基于样本与基因融合状态的Hippo通路基因躯干克隆+分支克隆体细胞拷贝数变异变化数据
10. TRUNCAL + BRANCH HR：基于样本与基因融合状态的HR通路基因躯干克隆+分支克隆体细胞拷贝数变异变化数据
11. TRUNCAL + BRANCH NHEJ：基于样本与基因融合状态的NHEJ通路基因躯干克隆+分支克隆体细胞拷贝数变异变化数据
12. SUMMARY：基因融合阳性与基因融合阴性肿瘤的两两列联表数据
提供机构：
University of Leicester
创建时间：
2023-03-30
