Manual organelle segmentations (crop329) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-1)

This acquisition is part of the CellMap 2024 Segmentation Challenge
Challenge DOI: https://doi.org/10.25378/janelia.c.7456966Challenge Website: https://cellmapchallenge.janelia.org/Annotation description: Dense segmentations of lipid droplet in jrc_mus-liver-zon-1 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.
Annotation ID: crop329
Primary Annotator: Woohyun Park
Annotation protocol: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)
Software: Amira 3D 2021.1, Classic Segmentation Workroom
Annotated voxel size (nm): 32 x 32 x 32 (x, y, z)
Annotated data dimensions (µm): 16 x 16 x 16 (x, y, z)
Annotated data offset (nm): 57612 x 89612 x 210604 (x, y, z)
Classes annotated: lipid droplet
Dataset URL: s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop329
Source (EM) dataset ID: jrc_mus-liver-zon-1
Source (EM) voxel size (nm): 8 x 8 x 8 (x, y, z)
Source (EM) data dimensions (µm): 397.16 x 171.61 x 188.81 (x, y, z)
Source (EM) DOI: https://doi.org/10.25378/janelia.24128700
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-1
Publication: CellMap Segmentation Challenge, 2024.
The CellMap Project Team during this time consisted of: David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.
The CellMap Project Team Steering Committee during this time consisted of: Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.

本次标注数据集隶属于CellMap 2024图像分割挑战赛（CellMap 2024 Segmentation Challenge）。
挑战赛DOI：https://doi.org/10.25378/janelia.c.7456966
挑战赛官方网站：https://cellmapchallenge.janelia.org/
标注说明：基于Amira 3D 2021.1、Classic Segmentation Workroom软件，以及《用于机器学习的体视电子显微镜细胞器手动分割（V.3版）》（Using Amira to manually segment organelles in vEM for machine learning V.3）标注规程，对jrc_mus-liver-zon-1样本中的脂滴（lipid droplet）开展稠密分割标注。
标注ID：crop329
主要标注人员：Woohyun Park
标注规程：《用于机器学习的体视电子显微镜细胞器手动分割（V.3版）》（http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3）
所用软件：Amira 3D 2021.1、Classic Segmentation Workroom
标注体素尺寸（纳米）：32×32×32（x、y、z轴）
标注数据维度（微米）：16×16×16（x、y、z轴）
标注数据偏移量（纳米）：57612×89612×210604（x、y、z轴）
标注类别：脂滴（lipid droplet）
数据集访问链接：s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop329
原始电子显微镜数据集ID：jrc_mus-liver-zon-1
原始电子显微镜体素尺寸（纳米）：8×8×8（x、y、z轴）
原始电子显微镜数据维度（微米）：397.16×171.61×188.81（x、y、z轴）
原始电子显微镜数据集DOI：https://doi.org/10.25378/janelia.24128700
可视化平台网站：https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-1
相关出版物：《CellMap 2024图像分割挑战赛》，2024年。
本次项目周期内的CellMap项目团队成员包括：David Ackerman、Davis Bennett、Marley Bryant、Hannah Nguyen、Grace Park、Alyson Petruncio、Alannah Post、Jacquelyn Price、Diana Ramirez、Jeff Rhoades、Rebecca Vorimo、Aubrey Weigel、Marwan Zouinkhi、Yurii Zubov。
本次项目周期内的CellMap项目指导委员会成员包括：Misha Ahrens、Christopher Beck、Teng-Leong Chew、Daniel Feliciano、Jan Funke、Harald Hess、Wyatt Korff、Jennifer Lippincott-Schwartz、Zhe J. Liu、Kayvon Pedram、Stephan Preibisch、Stephan Saalfeld、Ronald Vale、Aubrey Weigel。