MOESM1 of Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

Additional file 1: Figure S1.Relative abundance (%) of 20 groups of functional genes representing 204 selected genes (number of animals, n = 50 samples). The sum of the relative abundance (%) of genes grouping within the same function is shown in this figure. Figure S2A. Total abundance of 204 selected genes based on diet treatments (n = 50). *P value < 0.05. Figure S2B. Shannon index diversity of 204 selected genes based on diet treatments (n = 50). *P value < 0.05, °P value < 0.1. Figure S3. Canonical Variate analysis (CVA) on the structure of 204 genes selected based on breed, age, weight, Proteobacteria ratio, FCR and methane grouping (n = 50). Figure S4. Factors explaining the significant differences observed for Proteobacteria ratio (n = 50). Figure S5. Microbial community composition at the phylum level (n = 50). Table S1. Characteristics of the cattle used in the experiment. Table S2. Groups of AMR genes significantly correlated with abundance of the Proteobacteria phylum and Proteobacteria ratio. Table S3. The relative abundance of AMR genes. Table S4, Proteobacteria populations strongly correlated with the Proteobacteria ratio. Table S5. Functional genes significantly correlated with Proteobacteria ratio (PLS). Table S6. Cluster distribution of functional genes significantly different between diets.

附加文件1：图S1。展示20组功能基因的相对丰度（%），该组功能基因共涵盖204个选定基因（动物样本量n=50），本图呈现了同一功能类别下所有基因相对丰度（%）的总和。图S2A：基于日粮处理的204个选定基因的总丰度（n=50），*代表P值<0.05。图S2B：基于日粮处理的204个选定基因的香农指数（Shannon index）多样性（n=50），*P值<0.05，°P值<0.1。图S3：针对基于品种、日龄、体重、变形菌门（Proteobacteria）比例、饲料转化率（FCR）和甲烷分组筛选出的204个基因的结构开展的典范变量分析（Canonical Variate analysis, CVA）（n=50）。图S4：阐释与变形菌门比例相关显著差异的影响因素（n=50）。图S5：门分类水平下的微生物群落组成（n=50）。表S1：本实验所用肉牛的基本特征信息。表S2：与变形菌门（Proteobacteria）丰度及变形菌门比例显著相关的抗微生物药物耐药性（Antimicrobial Resistance, AMR）基因组别。表S3：抗微生物药物耐药性（AMR）基因的相对丰度。表S4：与变形菌门比例显著相关的变形菌门菌群类群。表S5：与变形菌门比例显著相关的功能基因（偏最小二乘回归，PLS）。表S6：不同日粮组间存在显著差异的功能基因的聚类分布情况。