Dataset for the paper submitted for peer-review with the title "Quantifying heterotrophic bacteria parameters and dissolved organic carbon biodegradability through oxygen data assimilation in a river water quality model"

The proposed dataset is related to the following article submitted for peer review: Hasanyar, M., Flipo, N., Romary, T., Wang, S. (2023), Quantifying heterotrophic bacteria parameters and dissolved organic carbon biodegradability through oxygen data assimilation in a river water quality model, UNDER PEER-REVIEW It consists of command files for the prose-pa0.74 software available here: https://gitlab.com/prose-pa/prose-pa To run the model : 1. Compile prose-pa0.74 2. Copy the executable in the current directory 3. In a terminal launch > ./prose-pa0.74 simulation.COMM test.log The “simulation.COMM” holds the settings for the ProSe-PA simulation related to the paper mentioned in the front head of the current file. The information on different parameters of “simulation.COMM” are included in “bathymetrie”, “Cmds”, “Inflows”, “layers”, “meteo”, “o2_obs”, “param_bio”, “Reaches” and “Singularities” folders. The “bathymetrie” folder holds the geometric information of several cross-sections along the river. The Cmds folder holds the “simulation.COMM” file. The “Inflows” folder the information about the boundary condition inflows to the river such as discharge, concentration of organic carbon, etc. The layer folder holds data of the initial conditions of the model (Table 2 in the article). The “meteo” folder holds the meteorological information. The “o2_obs” folder holds the observed oxygen data needed to do data assimilation. The “param_bio” folder holds information on the physiology of bacteria, phytoplankton, and other model species. The “Reaches” folder holds information about river reaches and their manning coefficient. The “param_range” file holds the variation range of model parameters considered in data assimilation together with their perturbation percentage. The output files are written in $HOME/Outputs folder. It is possible to change it directly in simulation.COMM, last entry “Output_folder”.本数据集关联一篇已提交同行评审的学术论文：Hasanyar, M., Flipo, N., Romary, T., Wang, S. (2023), 《通过河流水质模型中的氧气数据同化量化异养细菌参数与溶解性有机碳生物降解性》（目前处于同行评审阶段）。 本数据集包含可从以下地址获取的prose-pa0.74软件的命令文件：https://gitlab.com/prose-pa/prose-pa。 模型运行步骤如下： 1. 编译prose-pa0.74； 2. 将编译生成的可执行文件复制至当前工作目录； 3. 在终端中执行命令：> ./prose-pa0.74 simulation.COMM test.log。 其中"simulation.COMM"文件包含与本文（即本文件前言提及的论文）相关的ProSe-PA模拟设置。"simulation.COMM"的各项参数信息分别存储于bathymetrie、Cmds、Inflows、layers、meteo、o2_obs、param_bio、Reaches及Singularities文件夹中： - bathymetrie文件夹存储沿河多个断面的几何信息； - Cmds文件夹包含"simulation.COMM"文件本身； - Inflows文件夹存储河流边界入流的相关信息，如流量、有机碳浓度等； - layers文件夹存储模型初始条件数据（对应论文中的表2）； - meteo文件夹存储气象相关数据； - o2_obs文件夹存储数据同化所需的实测氧气数据； - param_bio文件夹存储细菌、浮游植物及其他模型物种的生理特性信息； - Reaches文件夹存储河段及其曼宁系数的相关信息。 "param_range"文件存储了数据同化过程中所考虑的模型参数的变化范围及其扰动百分比。模型的输出文件将写入$HOME/Outputs文件夹，可通过修改"simulation.COMM"的最后一项"Output_folder"直接更改输出目录路径。