Additional file 12 of Conserved associations between G-quadruplex-forming DNA motifs and virulence gene families in malaria parasites

Additional file 12 Table S7. Putative G-quadruplex-forming sequences in the genomes of Plasmodium parasites, found by QGRS Mapper. Genomes were downloaded from PlasmoDB, v. 44, and searched using QGRS Mapper with the parameters: regex: G3N(0 − 11)G3N(0 − 11)G3N(0 − 11)G3, max length: 45, min G-group: 3, loop size: 0–11. “RC_Location Calculated” refers to the location of PQSs on the antisense strand, relative to the 5′ end of the sense strand. The “Strand (cf gene or nearest gene)” category was denoted as antisense if the PQS was on the opposite strand of its nearest gene, or sense if the PQS was on the same strand as its nearest gene. The “distance from nearest gene” was positive if the PQS was upstream of the nearest gene, negative if the PQS was downstream of the nearest gene, or equal to 0 if the PQS was in the coding sequence of the nearest gene.

补充文件12 表S7：通过QGRS Mapper（QGRS Mapper）在疟原虫（Plasmodium parasites）基因组中鉴定得到的潜在G四链体（G-quadruplex）形成序列。所用基因组均从PlasmoDB数据库（版本44）下载，并采用QGRS Mapper进行序列搜索，搜索参数为：正则表达式G3N(0−11)G3N(0−11)G3N(0−11)G3、最大长度45、最小G基团数3、环区长度范围0–11。"RC_Location Calculated"指潜在G四链体序列（PQS，Potential Quadruplex-forming Sequences）在反义链上相对于正义链5′端的位置。"Strand (cf gene or nearest gene)"类别规则如下：若PQS位于其最近邻基因的互补链，则标记为反义链；若PQS与最近邻基因处于同一条链，则标记为正义链。"distance from nearest gene"字段规则为：若PQS位于最近邻基因上游，距离值为正；若位于下游，则为负；若PQS处于最近邻基因的编码序列内，则距离值为0。