Manual organelle segmentations (crop72) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of macrophage cell (jrc_macrophage-2)

Name: Manual organelle segmentations (crop72) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of macrophage cell (jrc_macrophage-2)
Creator: Janelia Research Campus
Published: 2024-12-18 18:33:48
License: 暂无描述

DataCite Commons2024-12-18 更新2025-04-16 收录

下载链接：

https://janelia.figshare.com/articles/dataset/Manual_organelle_segmentations_crop72_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_macrophage_cell_jrc_macrophage-2_/24239341/1

下载链接

链接失效反馈

官方服务：

资源简介：

This acquisition is part of the CellMap 2024 Segmentation Challenge - Challenge DOI: https://doi.org/10.25378/janelia.c.7456966 - Challenge Website: https://cellmapchallenge.janelia.org/ Annotation description: Dense segmentations of extracellular space in jrc_macrophage-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol. Annotation ID: crop72 Primary Annotator: COSEM Project Team Annotation protocol: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3) Software: Amira 3D 2021.1, Classic Segmentation Workroom Annotated voxel size (nm): 2 x 2 x 2 (x, y, z) Annotated data dimensions (µm): 0.8 x 0.8 x 0.8 (x, y, z) Annotated data offset (nm): 2747 x 195 x 21771 (x, y, z) Classes annotated: extracellular space Dataset URL: s3://janelia-cosem-datasets/jrc_macrophage-2/jrc_macrophage-2.zarr/recon-1/labels/groundtruth/crop72 Source (EM) dataset ID: jrc_macrophage-2 Source (EM) voxel size (nm): 4 x 4 x 4 (x, y, z) Source (EM) data dimensions (µm): 40 x 8 x 44.35 (x, y, z) Source (EM) DOI: https://doi.org/10.25378/janelia.13114343 Visualization website: https://openorganelle.janelia.org/datasets/jrc_macrophage-2 Publication: CellMap Segmentation Challenge, 2024. The CellMap Project Team during this time consisted of: David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov. The CellMap Project Team Steering Committee during this time consisted of: Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.

本数据集采集是CellMap 2024分割挑战赛的一部分 - 挑战赛DOI： https://doi.org/10.25378/janelia.c.7456966 - 挑战赛网站： https://cellmapchallenge.janelia.org/ 标注描述：使用Amira 3D 2021.1、Classic Segmentation Workroom及“Using Amira to manually segment organelles in vEM for machine learning V.3”标注协议，对jrc_macrophage-2中的细胞外空间进行密集分割。 标注ID：crop72 主要标注者：COSEM项目团队 标注协议：Using Amira to manually segment organelles in vEM for machine learning V.3（http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3） 软件：Amira 3D 2021.1、Classic Segmentation Workroom 标注体素大小（纳米）：2 x 2 x 2（x, y, z） 标注数据维度（微米）：0.8 x 0.8 x 0.8（x, y, z） 标注数据偏移量（纳米）：2747 x 195 x 21771（x, y, z） 标注类别：细胞外空间 数据集URL：s3://janelia-cosem-datasets/jrc_macrophage-2/jrc_macrophage-2.zarr/recon-1/labels/groundtruth/crop72 源（EM）数据集ID：jrc_macrophage-2 源（EM）体素大小（纳米）：4 x 4 x 4（x, y, z） 源（EM）数据维度（微米）：40 x 8 x 44.35（x, y, z） 源（EM）DOI：https://doi.org/10.25378/janelia.13114343 可视化网站：https://openorganelle.janelia.org/datasets/jrc_macrophage-2 出版物：CellMap分割挑战赛，2024年。 此期间CellMap项目团队成员包括：David Ackerman、Davis Bennett、Marley Bryant、Hannah Nguyen、Grace Park、Alyson Petruncio、Alannah Post、Jacquelyn Price、Diana Ramirez、Jeff Rhoades、Rebecca Vorimo、Aubrey Weigel、Marwan Zouinkhi、Yurii Zubov。 此期间CellMap项目团队指导委员会成员包括：Misha Ahrens、Christopher Beck、Teng-Leong Chew、Daniel Feliciano、Jan Funke、Harald Hess、Wyatt Korff、Jennifer Lippincott-Schwartz、Zhe J. Liu、Kayvon Pedram、Stephan Preibisch、Stephan Saalfeld、Ronald Vale及Aubrey Weigel。

提供机构：

Janelia Research Campus

创建时间：

2024-12-13