Genomic data of Nanmaohu Park vascular plant specimen, RL0012
收藏DataCite Commons2025-05-26 更新2025-04-15 收录
下载链接:
http://gigadb.org/dataset/101075
下载链接
链接失效反馈官方服务:
资源简介:
We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001752. Preliminary identification is that it is of the family Moraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 636790000bp. We have generated 69580000000bp of data, which gives a theoretical coverage of 109.3x.
我们在中国云南瑞丽植物园采集了维管植物样本。所有样本的采集地理范围为东经97.646389至98.099167、北纬23.878333至24.155556,海拔介于740米至1200米之间。共采集维管植物1093份,取其幼叶用于测序,同时制作了凭证标本。标本保存于中国国家基因库标本馆(HCNGB)。其中760份标本提取的DNA适用于测序;其余333份样本已制作凭证标本,其植物图像可在相关数据集中获取。这760份样本代表了隶属于48目135科的约696种维管植物。目前正在对所有标本进行正式鉴定,但截至本数据集发布时,仅有极少数标本的鉴定水平超出科级分类单元。本数据集包含凭证号为HCNGB:RUILI:HCNGB_00001752的植物基因组数据及图像,其初步鉴定结果为桑科(Moraceae)植物。通过测序的K-mer分布预测,该植物基因组大小为636790000碱基对(bp);已生成数据量达69580000000碱基对,理论测序深度为109.3倍。
提供机构:
GigaScience Database
创建时间:
2019-01-24



