Data for E. faecium ISL3 project: long-read Enterococcus genome resource + preprocessed data for manuscript analyses

# NOTE: This project and associated manuscript are WIP under review; publication information will be updated shortly. # Please contact the authors for more information. 1. Resource: long-read clinical Enterococcus genome assemblies The gzipped tarball ente_isolate_assemblies.tar.gz contains 282 new long-read genome assemblies from Enterococcus clinical isolates. Bloodstream infection isolates were collected between 2020-2024 at Stanford Hospitals. Isolates were sequenced (Oxford Nanopore, R10.4.1 chemistry) and assembled (Flye 2.9.1) in 2024. Included genomes: 107 E. faecium, 167 E. faecalis, 8 other enterococci. See the associated manuscript's Methods section for more detail. 2. Preprocessed source data for manuscript analyses The package analyses_preprocessed_source_data.zip contains preprocessed source data files that can be used to reproduce analyses and figures from the associated manuscript. More instructions can be found on our GitHub repository.# 注意：本项目及关联手稿尚处于审稿阶段（WIP，Work In Progress）；正式出版信息将随后更新。 # 如需获取更多详情，请联系本文作者。 1. 数据集资源：临床肠球菌长读长基因组组装序列 压缩包ente_isolate_assemblies.tar.gz 包含282株全新临床肠球菌分离株的长读长基因组组装结果。 本次研究的血流感染分离株采集于2020年至2024年间的斯坦福医院（Stanford Hospitals）。 所有分离株均于2024年完成测序与组装：测序采用牛津纳米孔（Oxford Nanopore）R10.4.1测序化学试剂，组装则通过Flye 2.9.1软件完成。 本次纳入的基因组涵盖：107株屎肠球菌（E. faecium）、167株粪肠球菌（E. faecalis）以及8株其他肠球菌属菌种。 更多详细信息请参阅关联手稿的方法学章节。 2. 手稿分析用预处理源数据 压缩包analyses_preprocessed_source_data.zip 包含可用于复现关联手稿中所有分析结果与图表的预处理源数据文件。更多操作说明可在我们的GitHub代码仓库中查阅。