ALLMAPS supporting data: Medicago genome assembly

Supporting data for ALLMAPS. The data set includes Medicago de novo genomic scaffolds, a combination of three maps including optical map, genetic map and synteny to chickpea. ALLMAPS was run to produce pseudomolecules based on these input data. Weighting scheme for ALLMAPS was optical map (weight=3) > genetic map (weight=2) > synteny (weight=1). Command python -m jcvi.assembly.allmaps path Mt.bed scaffolds.fasta --links=40 Changelog - 6/7/2015, updated run.sh script

本数据集为ALLMAPS的配套支撑数据，包含苜蓿（Medicago）从头组装的基因组支架（scaffolds），以及三类整合图谱：光学图谱（optical map）、遗传图谱（genetic map）与鹰嘴豆共线性（synteny）图谱。基于上述输入数据，通过ALLMAPS工具构建得到假染色体（pseudomolecules）。ALLMAPS采用的权重方案为：光学图谱（权重=3）＞遗传图谱（权重=2）＞共线性图谱（权重=1）。执行命令：python -m jcvi.assembly.allmaps path Mt.bed scaffolds.fasta --links=40。更新日志 - 2015年6月7日：更新run.sh脚本。