Ceraceosorus_rDNA_heterogeneity_SupplementaryData

This item provides supplementary data used for examining rDNA sequence heterogeneity in <i>Ceraceosorus </i>and allied fungal species in Ustilaginomycotina. It contains raw data from targeted amplicon Illumina sequencing of rDNA regions in each sample, and reference rDNA sequences used for examining sequence heterogeneity. The file also contains SNP vcf reports obtained from targeted amplicon Illumina sequencing, as well as SNP vcf reports obtained from WGS Illumina sequencing. The raw WGS sequencing data can be retrieved from the DOE-Joint Genome Institute Fungal Genomics Program upon a request. Sample IDs correspond to fungal species as follows:ATCC22867: Strain for <i>Ceraceosorus bombacis</i>KRAM_F-57385, KRAM_F-57386, KRAM_F-57387: Voucher specimens for <i>Ceraceosorus africanus</i>MCA4658: Strain for <i>Ceraceosorus guamensis</i>SA252w: Strain for <i>Ceraceosorus americanus</i>MCA3882: Strain for <i>Meira miltonrushii</i>MCA4186: Strain for <i>Tilletiopsis washingtonensis</i>MCA4718: Strain for <i>Pseudomicrostroma glucosiphilum</i>SA807: Strain for <i>Violaceomyces palustris</i>TKC58A: Strain for <i>Mycosarcoma</i> (<i>Ustilago</i>)<i> maydis</i>

本数据集为用于研究黑粉菌亚门（Ustilaginomycotina）中角担菌属（Ceraceosorus）及其近缘真菌物种的核糖体DNA（rDNA）序列异质性的补充数据。其包含各样品中rDNA区域的靶向扩增子Illumina测序原始数据，以及用于序列异质性分析的参考rDNA序列。本文件同时收录了靶向扩增子Illumina测序得到的单核苷酸多态性（SNP）变异格式（VCF）报告，以及全基因组测序（WGS）Illumina测序得到的SNP VCF报告。原始WGS测序数据可通过申请从美国能源部联合基因组研究所真菌基因组学项目（DOE-Joint Genome Institute Fungal Genomics Program）获取。

各样本ID对应的真菌物种如下：
ATCC22867：吉贝角担菌（*Ceraceosorus bombacis*）菌株
KRAM_F-57385、KRAM_F-57386、KRAM_F-57387：非洲角担菌（*Ceraceosorus africanus*）凭证标本
MCA4658：关岛角担菌（*Ceraceosorus guamensis*）菌株
SA252w：美洲角担菌（*Ceraceosorus americanus*）菌株
MCA3882：梅拉·米尔顿拉什氏菌（*Meira miltonrushii*）菌株
MCA4186：华盛顿黑粉孢菌（*Tilletiopsis washingtonensis*）菌株
MCA4718：嗜糖假微孢菌（*Pseudomicrostroma glucosiphilum*）菌株
SA807：沼泽紫孢菌（*Violaceomyces palustris*）菌株
TKC58A：玉米瘤黑粉菌（*Mycosarcoma maydis*，原学名为*Ustilago maydis*）菌株