Additional file 1 of Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales

Additional file 1: Tables S1–S8. Table S1: Collection, assembly, and accession numbers information of 93 Poales species. Table S2: Features of 93 Poales species plastomes. Table S3: Primes used for validation of four plastomes (Anarthria humilis, Isolepis setacea, Xyris capensis and X. capensis var. schoenoides) and sequence identity information of Sanger sequencing. Table S4: The permutation of number coded LCBs, the inversion numbers and inversion regions for each plastome. Table S5: Corresponding nucleotide models using the baseml of PAML for the 80PG-half matrix. Table S6: The positive selection test based on branch-site model. Table S7: Selective pressure analysis based on the free ratio model on the genes lost in certain lineages. Table S8: Collection information, sequencing information of plastid data for all taxa sampled used in phylogenetic tree.

附加文件1：附表S1至S8。
附表S1：93个禾本目（Poales）物种的采集、组装及登录号信息。
附表S2：93个禾本目物种种质体基因组的特征信息。
附表S3：用于验证4个质体基因组（低矮节柄草Anarthria humilis、刚鳞草Isolepis setacea、南非黄眼草Xyris capensis及其变种X. capensis var. schoenoides）的引物序列，以及桑格（Sanger）测序的序列一致性信息。
附表S4：各质体基因组的编号编码局部共线性区块（LCBs）重排情况、倒位数目及倒位区域。
附表S5：针对80PG-half矩阵，采用PAML的baseml模块构建的对应核苷酸替换模型。
附表S6：基于分支位点模型的正选择检验结果。
附表S7：针对特定谱系中丢失的基因，基于自由比率模型开展的选择压力分析结果。
附表S8：用于构建系统发育树的所有采样分类群的质体数据采集信息及测序信息。