Kellenberger_etal_overdominance_datasets

<b>Study:</b>Emergence of a floral colour polymorphism by pollinator-mediated overdominance<br><br><b>Authors:</b>Roman T. Kellenberger, Kelsey J.R.P. Byers, Rita M. De Brito Francisco, Yannick M. Städler, Amy M. LaFountain, Jürg Schönenberger, Florian P. Schiestl, Philipp M. Schlüter<br><br><b>Small datasets:</b> Table containing estimated absolute and relative frequencies of G. rhellicani colour morphs at Puflatsch 1997-2016 Table containing morphological and fitness data for the G. rhellicani colour morphs in the 14 plots at Puflatsch 2015-2016 Table containing morphological, metabolomic, and genetic data for the focal G. rhellicani plants at Puflatsch Table containing results of the pollinator exclusion experiment conducted at Ofenpass in 2016 Table containing time-lapse camera recordings of insect landings on G. rhellicani inflorescences at Puflatsch 2016-2017 Table containing genetic information of the G. rhellicani plants used for time-lapse recordings of insect landings in 2017 Table containing temperature measurements of G. rhellicani inflorescences at Puflatsch in 2016 Table containing floral scent profiles from 3 time points, morphological, and genetic information of G. rhellicani plants Table containing morphological, metabolomic, and genetic data for G. rhellicani plants at Bondone Table containing genetic information of G. rhellicani plants from 13 other Alpine populations Table containing qRT-PCR quantifications of GrMYB1 and GrANS1 in G. rhellicani plants from Ofenpass treated with GrMYB1 dsRNA<br><br><br><b>Images focal plants:</b>Compressed folder containing jpeg images of inflorescences of the focal <i>G. rhellicani</i> plants (Puflatsch and Bondone). See small datasets for sample information.<br><br><br><b>Images plot plants 2015:</b>Compressed folder containing jpeg images of inflorescences of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population in 2015. Brightness of the photos has been increased to facilitate flower counting. Images for plot C are missing. See small datasets for sample information.<br><br><br><b>Images plot plants fruits 2015:</b>Compressed folder containing jpeg images of infructescences of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population in 2015. Brightness of the photos has been increased to facilitate fruit counting. See small datasets for sample information.<br><br><b>Images plot plants seeds 2015:</b>Compressed folder containing jpeg microscopy images of seeds of the <i>G. rhellicani</i> plants in the 14 plots established along the Northern ridge of the Puflatsch population in 2015. Filename structure: plant ID - date - image number. See small datasets for sample information.<br><br><b>RSEM dataset:</b>gzip compressed table containing RSEM-generated expression values per transcript and <i>Gymnadenia rhellicani </i>plant individual extracted from the corresponding Lexogen QuantSeq dataset.<br><br>md5 (zip):4ea420187da3f9dcbbd63b98b45962ab<br><br>md5 (uncompressed): 5a60c6ec4de1973eec2b929d4ce4de21<br>Sample origin / population:NrRTK3 and NrRTK4: Puflatsch, ItalyNrRTK5: Chandolin, SwitzerlandNrRTK9: Ofenpass, Switzerland<br><br><b>TWAS dataset:</b>gzip-compressed vcf file containing sequence variation data per transcript and <i>Gymnadenia </i>plant individual extracted from the corresponding Lexogen QuantSeq dataset.<br>md5 (zip): <br>fa9f89cfd7cd8062558893a00df451a8<br><br>md5 (uncompressed): 8081a0b6ab1901c2f8ce6ac73ab4ef75<br>Sample species:GdKB: <i>Gymnadenia conopsea</i>NrRTK: <i>Gymnadenia rhellicani</i><br>Sample origin / population:GdKB1: Davos, SwitzerlandGdKB2: Preda, Switzerland<br>GdKB3: Tschierv, Switzerland<br>NrRTK3 and NrRTK4: Puflatsch, ItalyNrRTK5: Chandolin, SwitzerlandNrRTK9: Ofenpass, Switzerland<br><br><b>TRINITY dataset:</b>gzip-compressed fasta file containing the Trinity-assembled combined reference transcriptome for <i>Gymnadenia</i>.<br><br>md5 (zip):bc1d625b2518f1cb3dc72fb97d87fc07<br><br>md5 (uncompressed):43c7838a0ac20c4c23917d6bd4818f32<br><br><i>Gymnadenia</i> samples used for assembly:NrRTK4G - <i>G. rhellicani </i>(Puflatsch, Italy, black)<br>NrRTK3E2 - <i>G. rhellicani</i> (Puflatsch, Italy, red)NrRTK3F2 - <i>G. rhellicani </i>(Puflatsch, Italy, white)NrRTK5W - <i>G. rhellicani </i>(Chandolin, Switzerland, yellow)NrRTK5X - <i>G. rhellicani</i> (Chandolin, Switzerland, black)<br>NrRTK9L - <i>G. rhellicani</i> (Ofenpass, Switzerland, black)<br>GdKB1P - <i>G. densiflora</i> (Davos, Switzerland)GdKB2E - <i>G. densiflora</i> (Preda, Switzerland)<br>GcKG13 - <i>G. conopsea</i> (Tschierv, Switzerland)GoKG19 - <i>G. odoratissima</i> (Tschierv, Switzerland)

**研究主题**：传粉媒介介导的超显性驱动下的兰花花色多态性形成

**作者团队**：Roman T. Kellenberger、Kelsey J.R.P. Byers、Rita M. De Brito Francisco、Yannick M. Städler、Amy M. LaFountain、Jürg Schönenberger、Florian P. Schiestl、Philipp M. Schlüter

**小型数据集**：
1. 包含1997-2016年Puflatsch样地中*Gymnadenia rhellicani*（下文简称G. rhellicani）花色变型的绝对与相对频率估算值的表格
2. 包含2015-2016年Puflatsch的14个样地中G. rhellicani花色变型的形态学与适合度数据的表格
3. 包含Puflatsch样地中目标G. rhellicani植株的形态学、代谢组学与遗传学数据的表格
4. 包含2016年在Ofenpass开展的传粉者排除实验结果的表格
5. 包含2016-2017年Puflatsch样地中昆虫在G. rhellicani花序上停留的延时摄影记录数据的表格
6. 包含2017年用于昆虫停留延时摄影记录的G. rhellicani植株的遗传信息的表格
7. 包含2016年Puflatsch样地中G. rhellicani花序温度测量数据的表格
8. 包含3个时间点的花香谱、G. rhellicani植株的形态学与遗传学信息的表格
9. 包含Bondone样地中G. rhellicani植株的形态学、代谢组学与遗传学数据的表格
10. 包含来自13个其他阿尔卑斯山种群的G. rhellicani植株的遗传信息的表格
11. 包含对Ofenpass样地的G. rhellicani植株施用GrMYB1双链RNA后，对GrMYB1与GrANS1的qRT-PCR定量结果的表格

**目标植株图像集**：压缩文件夹，内含采自Puflatsch与Bondone样地的目标G. rhellicani植株的花序JPEG图像。样本详情参见小型数据集。

**2015年样地植株图像集**：压缩文件夹，内含2015年在Puflatsch种群北坡设立的14个样地中G. rhellicani植株的花序JPEG图像。为便于花朵计数，已提升照片亮度。C样地的图像缺失。样本详情参见小型数据集。

**2015年样地植株果实图像集**：压缩文件夹，内含2015年在Puflatsch种群北坡设立的14个样地中G. rhellicani植株的果序JPEG图像。为便于果实计数，已提升照片亮度。样本详情参见小型数据集。

**2015年样地植株种子图像集**：压缩文件夹，内含2015年在Puflatsch种群北坡设立的14个样地中G. rhellicani植株种子的显微JPEG图像。文件命名规则：植株ID-日期-图像编号。样本详情参见小型数据集。

**RSEM数据集**：gzip压缩表格，内含从对应Lexogen QuantSeq数据集提取的、每个转录本与单株G. rhellicani植株的RSEM表达量估算值。
压缩包md5校验值：4ea420187da3f9dcbbd63b98b45962ab
解压后文件md5校验值：5a60c6ec4de1973eec2b929d4ce4de21
样本来源/种群：
NrRTK3与NrRTK4：意大利Puflatsch样地
NrRTK5：瑞士Chandolin样地
NrRTK9：瑞士Ofenpass样地

**TWAS数据集**：gzip压缩VCF文件，内含从对应Lexogen QuantSeq数据集提取的、每个转录本与单株红门兰属（*Gymnadenia*）植株的序列变异数据。
压缩包md5校验值：fa9f89cfd7cd8062558893a00df451a8
解压后文件md5校验值：8081a0b6ab1901c2f8ce6ac73ab4ef75
样本物种：
GdKB：*Gymnadenia conopsea*
NrRTK：*Gymnadenia rhellicani*
样本来源/种群：
GdKB1：瑞士Davos样地
GdKB2：瑞士Preda样地
GdKB3：瑞士Tschierv样地
NrRTK3与NrRTK4：意大利Puflatsch样地
NrRTK5：瑞士Chandolin样地
NrRTK9：瑞士Ofenpass样地

**TRINITY数据集**：gzip压缩FASTA文件，内含红门兰属（*Gymnadenia*）的Trinity组装联合参考转录组。
压缩包md5校验值：bc1d625b2518f1cb3dc72fb97d87fc07
解压后文件md5校验值：43c7838a0ac20c4c23917d6bd4818f32
用于转录组组装的红门兰属样本：
NrRTK4G：*G. rhellicani*（意大利Puflatsch，黑色花变型）
NrRTK3E2：*G. rhellicani*（意大利Puflatsch，红色花变型）
NrRTK3F2：*G. rhellicani*（意大利Puflatsch，白色花变型）
NrRTK5W：*G. rhellicani*（瑞士Chandolin，黄色花变型）
NrRTK5X：*G. rhellicani*（瑞士Chandolin，黑色花变型）
NrRTK9L：*G. rhellicani*（瑞士Ofenpass，黑色花变型）
GdKB1P：*G. densiflora*（瑞士Davos，密花红门兰）
GdKB2E：*G. densiflora*（瑞士Preda，密花红门兰）
GcKG13：*G. conopsea*（瑞士Tschierv，宽叶红门兰）
GoKG19：*G. odoratissima*（瑞士Tschierv，香红门兰）