Genomic data of Nanmaohu Park vascular plant specimen, RL0256
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http://gigadb.org/dataset/101319
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002050. Preliminary identification is that it is of the family Cleome rutidosperma. <br>The K-mer distribution of the sequencing predicted the genome size to be 454672000bp. We have generated 64700000000bp of data, which gives a theoretical coverage of 142.3x.
我们采集了中国云南瑞丽植物园的维管植物样本。所有样本采集于东经97.646389至98.099167、北纬23.878333至24.155556的地理区域内,海拔范围为海拔740米至1200米。共计采集1093份维管植物样本,我们选取嫩叶进行测序,同时对标本进行了凭证化处理。标本存放于中国国家基因库标本馆(Herbarium of China National GeneBank,HCNGB)。共有760份标本获得了适用于测序的DNA;其余333份标本已完成凭证化,其植物图像可在相关数据集中获取。这760份样本代表了隶属于48目135科的约696种维管植物。目前仍在对所有标本进行正式鉴定,但截至发表时,仅有极少数标本的鉴定水平超出科级别。本数据集包含凭证号为HCNGB:RUILI:HCNGB_00002050的植物样本的基因组数据及图像。初步鉴定其属于Cleome rutidosperma科。测序的K-mer分布预测其基因组大小为454672000bp。我们已生成64700000000bp的数据,理论覆盖度达142.3x。
提供机构:
GigaScience Database
创建时间:
2019-01-24



