Additional file 4 of PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes

Additional file 4: Pathway statistics. This file is produced by PoMeLo and stored as ‘pathways_stats_organism_date.tab’ where the organism and date are specific to the analysis. This file contains all genome-gene combinations either found in the genomes in the analysis (target/non-target) or present in the complete reference set. For each genome-gene pair, information is provided about the genome statistics, genome name, genus and species, ec_number, patric_id, gene_name, and product description. Additionally, statistics are provided on the gene presence/absence across species, genus, group (target/non-target) and pathway.

补充文件4：通路统计信息。该文件由PoMeLo生成，存储为`pathways_stats_<生物名>_<日期>.tab`格式，其中<生物名>与<日期>为本次分析的专属标识。本文件涵盖本次分析中（靶标/非靶标）基因组内的所有基因组-基因组合，以及完整参考集内存在的所有基因组-基因组合。针对每个基因组-基因对，文件提供以下信息：基因组统计信息、基因组名称、属与种、EC编号（EC number）、patric_id、基因名称以及产物描述。此外，文件还提供了基因在物种、属、分组（靶标/非靶标）以及通路上的存在/缺失统计信息。