Listeria database for mashID - 2025-02-18 update
收藏DataCite Commons2025-02-25 更新2025-09-08 收录
下载链接：
https://figshare.com/articles/dataset/Listeria_database_for_mashID_-_2025-02-18_update/28489262
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资源简介：
Updated database to identify Listeria using mashID (https://github.com/duceppemo/mashID).75,767 genomes were downloaded using the NCBI datasets cli tool (https://www.ncbi.nlm.nih.gov/datasets/docs/v2/command-line-tools/download-and-install/).Downloaded genomes were renamed and binned by species (https://github.com/duceppemo/ncbi/blob/master/rename_and_bin_fasta.py)Genomes were dereplicated by species using a 0.1% similarity threshold (https://github.com/rrwick/Assembly-Dereplicator)
使用mashID（https://github.com/duceppemo/mashID）更新数据库以识别李斯特菌。使用NCBI数据集命令行工具（https://www.ncbi.nlm.nih.gov/datasets/docs/v2/command-line-tools/download-and-install/）下载了75,767个基因组。下载的基因组按物种进行重命名和分箱（https://github.com/duceppemo/ncbi/blob/master/rename_and_bin_fasta.py）。使用0.1%的相似性阈值按物种对基因组进行去重复处理（https://github.com/rrwick/Assembly-Dereplicator）
提供机构：
figshare
创建时间：
2025-02-25
