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Universality in the mechanical behavior of vertex models for biological tissues

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DataCite Commons2026-01-29 更新2026-04-25 收录
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https://datadryad.org/dataset/doi:10.5061/dryad.qbzkh18w9
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资源简介:
This dataset contains numerical simulation results. The dataset includes tabulated mechanical observables, such as the static shear modulus, storage modulus G', and loss modulus G'', computed for distinct vertex models under varying geometric and mechanical parameters. These include the standard vertex model, active foam model, spring-edge model, and dynamical vertex models with internal degrees of freedom. The data is organized to directly reproduce figures from the main text. The Jupyter notebook demonstrates how to load, process, and visualize this data. This repository is intended to support both the direct reproduction of published figures and enable further comparative studies of mechanical responses in vertex-based models of biological tissues. Detailed simulation protocols and modeling assumptions are provided in the associated manuscript.

本数据集包含数值模拟结果。数据集收录了针对多款顶点模型(vertex model),在不同几何与力学参数条件下计算得到的经制表整理的力学可观测量,包括静态剪切模量(static shear modulus)、储能模量G'(storage modulus G')与损耗模量G''(loss modulus G'')。所覆盖的模型类型包括标准顶点模型、活性泡沫模型、弹簧边模型以及带有内部自由度的动态顶点模型。本数据集的编排可直接复现论文正文中的各类图表。配套的Jupyter笔记本(Jupyter Notebook)演示了该数据集的加载、处理与可视化方法。本代码仓库既可支持已发表图表的直接复现,也可为基于生物组织顶点模型的力学响应开展后续对比研究提供支撑。详细的模拟流程与建模假设已在相关论文手稿中给出。
提供机构:
Dryad
创建时间:
2025-07-08
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