遇见数据集

SpliceAI_rocksdb_hg19_chr12

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Zenodo2023-05-17 更新2026-05-26 收录
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SpliceAI RocksDB for chromosome 12 of hg19 as used in the AbSplice publication: https://www.nature.com/articles/s41588-023-01373-3 Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: https://github.com/gagneurlab/spliceai_rocksdb This is also implemented in the AbSplice package: https://github.com/gagneurlab/absplice This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: https://github.com/Illumina/SpliceAI/tree/master

本数据集为AbSplice学术论文(https://www.nature.com/articles/s41588-023-01373-3)中使用的hg19人类基因组12号染色体对应的SpliceAI RocksDB数据库。该数据库存储了所有长度不超过4个核苷酸的单核苷酸变异(SNVs, Single Nucleotide Variants)与插入缺失变异(indels, insertions/deletions)的预计算SpliceAI得分。若需使用该数据库快速生成SpliceAI预测结果,请参考以下仓库:https://github.com/gagneurlab/spliceai_rocksdb。该功能同样已集成于AbSplice工具包中,对应仓库地址为:https://github.com/gagneurlab/absplice。本数据集包含SpliceAI预测得分。该得分仅对学术研究及非盈利性使用免费开放;其他商业用途需获得Illumina公司的商业授权,详细信息请参阅SpliceAI的GitHub仓库:https://github.com/Illumina/SpliceAI/tree/master。

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Zenodo
创建时间:
2023-05-16
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