Transposable Elements prediction and annotation in the M. incognita genome

This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configuration files (with parameters) used for this analysis and the in-house python script used to identify canonical TE annotations using TE consensus library and draft TE annotation (REPET output). Download: In order to preserve the folder and file tree structure (easier to reproduce the analyses), select all the files and click on download (original format). The download of a .zip archive should start. Once downloaded, extract the contents of the archive.

本数据集涵盖了南方根结线虫（Meloidogyne incognita）基因组中转座子（Transposable Element，TE）预测、注释及后续处理过程中生成的全部核心文件，例如转座子一致性文库、转座子注释结果及相关统计数据。本数据集同时包含本次分析所使用的全局工作流（含所用命令行）、分析所需的REPET配置文件（含参数设置），以及用于依托转座子一致性文库和转座子注释草稿（REPET输出结果）识别标准转座子注释的自研Python脚本。下载说明：为保留完整的文件夹与文件树结构（便于复现分析流程），请全选所有文件并点击下载（保留原始格式），此时将开始下载.zip压缩包。下载完成后，请解压该压缩包即可。