Genomic data of Nanmaohu Park vascular plant specimen, RL0487
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http://gigadb.org/dataset/101550
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002133. Preliminary identification is that it is of the family Embelia sessiliflora. <br>The K-mer distribution of the sequencing predicted the genome size to be 1831240000bp. We have generated 74220000000bp of data, which gives a theoretical coverage of 40.5x.
本数据集的维管植物样本采集自中国云南瑞丽植物园。所有样本的采集区域地理范围为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围为740米至1200米(以海平面为基准)。本次共采集维管植物样本1093份,每份样本均取幼叶用于测序,同时制作了凭证标本。所有标本均保存于国家基因库标本馆(Herbarium of China National GeneBank,HCNGB)。
其中761份标本提取到符合测序要求的DNA;剩余332份仅制作了凭证标本,相关植物的影像数据已公开于本数据集。这761份样本涵盖49个目、137个科下的689种维管植物。
目前团队仍在对所有标本进行正式分类鉴定,但截至论文发表时,仅极少数标本被鉴定到科以上的分类阶元。
本数据集包含编号为HCNGB:RUILI:HCNGB_00002133的凭证标本对应的基因组数据与影像资料。经初步鉴定,该样本为无柄叶酸藤子(Embelia sessiliflora)。
通过测序数据的K-mer分布分析,预测该样本的基因组大小为1831240000bp。本次测序共产生74220000000bp的原始数据,理论测序深度达40.5倍。
提供机构:
GigaScience Database
创建时间:
2019-01-24



