CellCanvas sample data for Winter 2024 UX Evaluation

This deposit contains 3 zarr datasets that contain cropped images and feature maps. Feature maps were computed with scikit-image and TomoTwin. Cropped images taken from images from this paper: https://doi.org/10.1101/2022.04.12.488077 Convolutional networks for supervised mining of molecular patterns within cellular context Irene de Teresa, Sara K. Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E. Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W.C. Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Anna Kreshuk, Julia Mahamid, Judith Zaugg bioRxiv 2022.04.12.488077; doi: https://doi.org/10.1101/2022.04.12.488077 Now published in Nature Methods doi: 10.1038/s41592-022-01746-2 Other links to the data: - https://www.ebi.ac.uk/empiar/EMPIAR-10988/ - https://cryoetdataportal.czscience.com/datasets/10000?prev=%2Fbrowse-data%2Fdatasets%3Fportal_id%3D10000 - https://cryoetdataportal.czscience.com/datasets/10001?prev=%2Fbrowse-data%2Fdatasets%3Fportal_id%3D10001本数据集存档包含3个Zarr数据集，内含裁剪后的图像与特征图。特征图通过scikit-image与TomoTwin计算得到。 裁剪后的图像源自下述论文中的图像：https://doi.org/10.1101/2022.04.12.488077 《细胞环境内分子模式监督挖掘的卷积神经网络》 作者：艾琳·德·特雷莎(Irene de Teresa)、萨拉·K·戈茨(Sara K. Goetz)、亚历山大·马托施(Alexander Mattausch)、弗罗西娜·斯托扬诺夫斯卡(Frosina Stojanovska)、克里斯蒂安·E·齐默利(Christian E. Zimmerli)、毛里西奥·托罗-纳韦尔潘(Mauricio Toro-Nahuelpan)、多萝西·W·C·程(Dorothy W.C. Cheng)、弗格斯·托勒维(Fergus Tollervey)、康斯坦丁·帕佩(Constantin Pape)、马丁·贝克(Martin Beck)、安娜·克雷舒克(Anna Kreshuk)、朱莉娅·马哈米德(Julia Mahamid)、朱迪思·扎格(Judith Zaugg) 该研究于2022年4月12日发布于预印本平台bioRxiv，预印本编号为2022.04.12.488077，DOI：https://doi.org/10.1101/2022.04.12.488077；后正式发表于《Nature Methods》，正式DOI：10.1038/s41592-022-01746-2 其他数据获取链接： - https://www.ebi.ac.uk/empiar/EMPIAR-10988/ - https://cryoetdataportal.czscience.com/datasets/10000?prev=%2Fbrowse-data%2Fdatasets%3Fportal_id%3D10000 - https://cryoetdataportal.czscience.com/datasets/10001?prev=%2Fbrowse-data%2Fdatasets%3Fportal_id%3D10001