Metadata file from the manuscript 'Alterations in airway microbiota in patients with acute lung injury after burn and inhalation injury'
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Metadata file for 16S rRNA gene sequencing done on airway samples from victims of burn and inhalation injury.Duplicate barcoded paired-end reads were sequenced on the Illumina MiSeq using the molecule tagging method described by Lundberg et. al. (Nature Methods, 2013, DOI: 10.1038/nmeth.2634) and the OTU table was generated using the MTToolbox pipeline (Yourstone, 2015, BMC Bioinformatics, DOI: 10.1168/1471-2105-15-284). The OTU table was imported into the program Explicet (www.explicet.org; Robertson et. al., Bioinformatics, 2013, DOI: 10.1093/bioinformatics/btt526), OTUs identified as the same species were condensed, and this table was exported and used for analysis in R.
本文件为针对烧伤与吸入损伤受害者气道样本开展16S rRNA基因测序的元数据文件。研究采用Lundberg等(《Nature Methods》, 2013, DOI: 10.1038/nmeth.2634)所述的分子标记方法,在Illumina MiSeq平台上对带条形码的重复双端测序读段进行测序;依托MTToolbox分析流程(Yourstone, 2015, 《BMC Bioinformatics》, DOI: 10.1168/1471-2105-15-284)生成操作分类单元(OTU, Operational Taxonomic Unit)表。将该OTU表导入Explicet软件(www.explicet.org; Robertson等, 《Bioinformatics》, 2013, DOI: 10.1093/bioinformatics/btt526),对注释为同一物种的OTU进行合并,随后导出该表格并用于R语言环境下的后续分析。
创建时间:
2016-07-23



