Defeat Recording Data
收藏Figshare2022-06-23 更新2026-04-28 收录
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https://figshare.com/articles/dataset/Defeat_Recording_Data/20102681
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资源简介:
Main Behavior Pickle File: Overall dictionary from (mouse,defeat_day)-->data data.keys() # body_part_tracking, extracted_features, fiber_photometry data['body_part_tracking] is a dictionary from body part to x,y coordinates over time (T frame, 120 Hz) data['extracted_features'] is a 12xT matrix of feature traces (120 Hz) data['fiber_photometry'] is a dictionary from 'fpts' or 'fpnac' to raw GCaMP recordings from the tail striatum or nucleus accumbens respectively (1017 Hz) Model Pickle Files: - 2 sets of random forest classifiers (trained RF model, cutoff for probability of behavior ocurring) dictionary of behavior name: (trained sklearn.ensemble.RandomForestClassifier, classification probability cutoff) - t-SNE model: dictionary: 'training': features in training set 'projection': sklearn.neural_network.MLPClassifier maps raw features to t-SNE space 'labeled_map': where clusters are in t-SNE space
主行为Pickle文件:以(小鼠,战败天数)为键的总字典,映射至对应数据。数据的键包括:body_part_tracking、extracted_features与fiber_photometry。
其中:
- data["body_part_tracking"]:以身体部位为键的字典,存储各部位随时间变化的x、y坐标(共T帧,采样率120 Hz)
- data["extracted_features"]:12×T的特征轨迹矩阵,采样率120 Hz
- data["fiber_photometry"]:以'fpts'或'fpnac'为键的字典,分别对应尾状纹状体(tail striatum)和伏隔核(nucleus accumbens)的原始GCaMP记录,采样率1017 Hz
模型Pickle文件:
- 两组随机森林分类器(包含已训练的随机森林模型、行为发生概率截断阈值):以行为名称为键的字典,每个键对应(已训练的sklearn.ensemble.RandomForestClassifier模型、分类概率截断阈值)
- t-SNE模型:为包含以下键的字典:
- "training":训练集特征
- "projection":将原始特征映射至t-SNE空间的sklearn.neural_network.MLPClassifier模型
- "labeled_map":t-SNE空间中的簇标注位置
创建时间:
2022-06-23



