Draft genome sequences recovered from the chicken cecal metagenome.
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https://figshare.com/articles/dataset/_Draft_genome_sequences_recovered_from_the_chicken_cecal_metagenome_/970422
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aClosest genome was identified based on blastp of the translated rpoB gene from the draft genome against the ncbi nr database b Completeness based on the sum size of total contigs compared to the size of the closest genome c Completeness based on the % of core genes present (see methods).
a. 基于将草图基因组(draft genome)中编码的rpoB基因翻译得到的蛋白序列与NCBI非冗余蛋白质序列数据库(NCBI non-redundant protein sequence database, NCBI NR)进行的BLASTp(Basic Local Alignment Search Tool Protein)比对,鉴定得到最近缘基因组。
b. 基于总重叠群(contig)的总长度与最近缘基因组长度的比值,评估基因组完整度。
c. 基于已检出核心基因(core genes)的占比,评估基因组完整度,详细方法参见方法部分。
创建时间:
2014-03-21



