MassBank <=> PubChem Deposition/Annotation Repository
收藏资源简介:
This is a repository to exchange MassBank record and substance information to create deposition and annotation files in PubChem. Supporting code in: https://gitlab.com/uniluxembourg/lcsb/eci/pubchem/-/tree/master/massbank_eu Credits: LCSB-ECI: Anjana Elapavalore, Todor Kondic, Emma Schymanski PubChem: Jeff Zhang, Paul Thiessen, Ben Shoemaker, Evan Bolton MassBank Consortium: Rene Meier, Steffen Neumann, Tobias Schulze Note: 20230419 files removes deprecated records from the 2022.12 release and still has InChIKeys added manually for ACES records (listed as NA) for annotation; all are present in the deposition. The unique substance file did not change, but close to 200 deprecated records were removed from the annotation set. 20230908, 20231129, 20240610, 20241126, 20250502: ACES InChIKeys added manually. 20251024: now automated.
本仓库用于交换MassBank记录与物质信息,以生成PubChem平台所需的提交文件与注释文件。配套代码仓库地址:https://gitlab.com/uniluxembourg/lcsb/eci/pubchem/-/tree/master/massbank_eu。致谢:LCSB-ECI项目团队:Anjana Elapavalore、Todor Kondic、Emma Schymanski;PubChem团队:Jeff Zhang、Paul Thiessen、Ben Shoemaker、Evan Bolton;MassBank联盟(MassBank Consortium):Rene Meier、Steffen Neumann、Tobias Schulze。备注:20230419版本的文件移除了2022.12发布版中的已弃用记录,且仍为ACES记录手动添加了InChI密钥(InChIKey)(标注为NA)以用于注释流程;所有记录均已包含在提交文件中。唯一物质文件未作改动,但注释数据集已移除近200条已弃用记录。20230908、20231129、20240610、20241126、20250502版本:仍手动为ACES记录添加InChI密钥。20251024版本:现已实现自动化添加。



