RNA velocity analysis of the integrated single cell atlas of neural crest lineages along the posterior developing zebrafish
收藏Mendeley Data2024-06-29 更新2024-06-30 收录
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https://zenodo.org/records/12551000
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资源简介：
H5AD files of an RNA velocity analysis of the integrated single cell atlas of neural crest lineages along the posterior developing zebrafish . For this, we have used Velocyto and scVelo. The notebooks to reproduce the scVelo part are here https://github.com/brunicardoso/e-signal-lab/blob/main/scvelo_sox10_integration48_68h__Uribe_using_original_seurat_metadata.ipynb . This analysis was based on data published here https://elifesciences.org/articles/60005
针对发育后期斑马鱼后段神经嵴谱系整合单细胞图谱开展RNA速率（RNA velocity）分析所得的H5AD文件。本分析使用了Velocyto与scVelo两款工具。可复现scVelo分析部分的Jupyter Notebook脚本已公开于：https://github.com/brunicardoso/e-signal-lab/blob/main/scvelo_sox10_integration48_68h__Uribe_using_original_seurat_metadata.ipynb。本分析的基础数据源自已发表学术文献：https://elifesciences.org/articles/60005
创建时间：
2024-06-29
