Additional file 1 of Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus

Additional file 1: Table S1. Transcripts differentially expressed between normal and GERD samples. Table S2. Transcripts differentially expressed between normal and MET samples. Table S3. Pathway analysis of differentially expressed transcripts. Table S4. Genes identified with possible differences in splicing events. Table S5. Intron retention and exon skipping events found between disease groups. Table S6. Circular RNAs tested for differential prevalence within disease groups. Table S7. Gene fusion events identified within the esophageal samples. Table S8. Per taxa differences between saliva and esophageal samples. Table S9. Per taxa differences between normal and GERD esophageal samples. Table S10. Per taxa differences between normal and MET esophageal samples. Table S11. Per taxa differences between normal and disease esophageal samples. Table S12. MINE analysis between Campylobacter and transcripts. Table S13. MINE analysis between Campylobacter iOTU36 and transcripts. Table S14. Conservation of proteins unique to GS1 C. concisus isolates. Table S15. Proteins unique to C. concisus ESOS44-1. Table S16. Differential expression between control and Campylobacter ESOS13-1. Table S17. Differential expression between control and Campylobacter ESOS14-1. Table S18. Differential expression between control and Campylobacter ESOS18-1. Table S19. Differential expression between control and Campylobacter ESOS33-1. Table S20. Differential expression between control and Campylobacter ESOS44-1. Table S21. Differential expression between control and Campylobacter ESOS44-4.

附加文件1：表S1 正常样本与胃食管反流病（Gastroesophageal Reflux Disease, GERD）样本间的差异表达转录本。表S2 正常样本与MET样本间的差异表达转录本。表S3 差异表达转录本的通路分析。表S4 经鉴定存在可变剪接事件差异的基因。表S5 疾病组间鉴定到的内含子保留与外显子跳跃事件。表S6 经检测在疾病组内存在丰度差异的环状RNA。表S7 食管样本中鉴定到的基因融合事件。表S8 唾液与食管样本间的分类群水平差异。表S9 正常食管样本与GERD食管样本间的分类群水平差异。表S10 正常食管样本与MET食管样本间的分类群水平差异。表S11 正常食管样本与疾病食管样本间的分类群水平差异。表S12 弯曲杆菌属（Campylobacter）与转录本间的MINE分析。表S13 弯曲杆菌iOTU36与转录本间的MINE分析。表S14 GS1株简洁弯曲杆菌（C. concisus）分离株特有蛋白的保守性分析。表S15 ESOS44-1株简洁弯曲杆菌（C. concisus）特有蛋白。表S16 对照组与弯曲杆菌ESOS13-1株样本间的差异表达分析。表S17 对照组与弯曲杆菌ESOS14-1株样本间的差异表达分析。表S18 对照组与弯曲杆菌ESOS18-1株样本间的差异表达分析。表S19 对照组与弯曲杆菌ESOS33-1株样本间的差异表达分析。表S20 对照组与弯曲杆菌ESOS44-1株样本间的差异表达分析。表S21 对照组与弯曲杆菌ESOS44-4株样本间的差异表达分析。