IBM Code and Input Data Associated with Brenden, T.O., L.N. Ivan, and T.P. Loch. Reducing Flavobacterium psychrophilum transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture

The Fortran code and description of input data needed for running the code is provided for the individual-based model described in  Brenden, T.O., L.N. Ivan, and T.P. Loch. In press. Reducing Flavobacterium psychrophilum transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture

The model is designed to evaluate how rearing practices could limit F. psychrophilum-induced losses of Oncorhynchus mykiss in flow-through, partial-reuse raceway systems. However, the code could be extended for other purspose, such as how immunization procedure might limit disease outbreak.   

How to Use Hatchery IBM.doc - Description of the IBM, steps for running, and description of the input files the IBM is expecting.

Input_CSV_files.zip - .zip file containing all the input files needed for running the IBM

HatcheryVaccination_pub.f95 - IBM model programmed in Fortran (expects a gfortran compiler)

本数据集提供了Brenden等人即将刊出的文献中所述基于个体模型（individual-based model, IBM）所需的Fortran代码，以及运行该代码所需的输入数据说明，相关文献信息如下：Brenden, T.O., L.N. Ivan, 及 T.P. Loch. 即将刊出. 《通过孵化场培育策略降低流水槽中嗜冷黄杆菌（Flavobacterium psychrophilum）的传播风险：一项基于个体模型的评估》. 水产养殖（Aquaculture）

该模型旨在评估在流水式、部分回用的流水槽系统中，养殖培育策略如何限制嗜冷黄杆菌诱导的虹鳟（Oncorhynchus mykiss）死亡损失。此外，该代码可扩展至其他研究场景，例如免疫程序如何限制疾病暴发。

How to Use Hatchery IBM.doc：该文档用于说明基于个体模型的相关内容、运行步骤，以及模型所需的输入文件要求。

Input_CSV_files.zip：包含运行该基于个体模型所需全部输入文件的压缩包。

HatcheryVaccination_pub.f95：采用Fortran语言编写的基于个体模型代码，需使用gfortran编译器进行编译。