遇见数据集

The haplotype-resolved genome assemblies of the hybrid Pinot Noir

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Zenodo2023-06-28 更新2026-05-26 收录
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The haplotype-resolved genome assemblies of the hybrid Pinot Noir, PN1(495.185MB) and PN2(489.609 MB).<br> To validate the quality of our assembly, K-mer and BUSO0 were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 1.43%. BUSCO to evaluate genomic completeness about 98.3% in PN1 of thecore conserved plant genes were found complete in the genome assembly. For genome annotation, the number of genesidentified by the genome is similar, more than 33,803 genes were found for Pinot Noir, PN1<br> The PN1 genome assembly: PNhap1.v1. fa<br> The PN1gene annotation: PNhap1.v1. gff3<br> The PN1 TE annotation: PNhap1_TE.v1.gff<br> The PN2 genome assembly: PNhap2.v1. fa

本数据集涵盖杂交黑皮诺(Pinot Noir)的单倍型解析基因组组装体,包含PN1(495.185MB)与PN2(489.609MB)两个样本。 为验证基因组组装质量,本研究开展了K-mer与BUSCO分析。通过K-mer评估基因组杂合度,估算结果为1.43%;针对PN1,利用BUSCO评估基因组完整度,结果显示核心保守植物基因中约98.3%可在该基因组组装体中被完整检出。 在基因组注释环节,本次组装的黑皮诺基因组可预测的基因数量较为一致,其中PN1可预测得到超过33803个基因。 PN1基因组组装文件:PNhap1.v1.fa PN1基因注释文件:PNhap1.v1.gff3 PN1转座因子(Transposable Element, TE)注释文件:PNhap1_TE.v1.gff PN2基因组组装文件:PNhap2.v1.fa

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Zenodo
创建时间:
2023-06-28
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