Genomic data of Nanmaohu Park vascular plant specimen, RL0981
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http://gigadb.org/dataset/102044
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002309. Preliminary identification is that it is of the family Crocosmia x crocosmiiflora. <br>The K-mer distribution of the sequencing predicted the genome size to be 1903790000bp. We have generated 75180000000bp of data, which gives a theoretical coverage of 39.5x.
我们在中国云南瑞丽植物园采集了维管植物样本。所有样本的采集地理范围为经度97.646389至98.099167、纬度23.878333至24.155556,海拔介于海平面以上740米至1200米之间。共采集维管植物1093份,取其幼叶用于测序,同时制作了凭证标本。这些标本保存于中国国家基因库植物标本馆(HCNGB)。其中760份标本提取到适用于测序的DNA;其余333份样本已制作凭证标本,其植物图像可在相关数据集中获取。这760份样本代表了隶属于48个目、135科的约696种维管植物。目前仍在持续开展所有标本的正式鉴定工作,但截至本数据集发布时,仅有极少数标本完成了科级以上的鉴定。该数据集包含凭证编号为HCNGB:RUILI:HCNGB_00002309的植物的基因组数据及图像。初步鉴定结果显示其属于Crocosmia x crocosmiiflora科。通过测序的K-mer分布预测该植物基因组大小为1903790000碱基对(bp)。我们已生成75180000000碱基对的测序数据,理论测序深度达39.5倍(x)。
提供机构:
GigaScience Database
创建时间:
2019-01-24



