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Example outputs from the meta-analysis fine-mapping simulation pipeline

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DataONE2022-08-19 更新2024-06-08 收录
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This dataset contains example outputs from the meta-analysis fine-mapping simulation pipeline (https://github.com/mkanai/meta-finemapping-simulation) used in Kanai, M. et al. (2022). Due to a storage limit, only example outputs have been deposited. Each directory contains the following simulated files. hapgen2_genotypes: This directory contains simulated genotypes from HAPGEN2, restricted to each genotyping array as described in the manuscript. assoc: This directory contains simulated GWAS results from PLINK2. Due to a storage limit, only one simulated phenotype is included. meta_analysis and meta_analysis_grch38: This directory contains meta-analysis results across all the meta-analysis configurations (Table S4, ST4_simulation_configurations.tsv). Due to a storage limit, only one simulated phenotype is included. Directories are separated by whether variants are on GRCh37 or GRCh38.

本数据集包含Kanai等(2022)研究中使用的meta分析精细定位模拟流程(https://github.com/mkanai/meta-finemapping-simulation)的示例输出结果。受存储容量限制,仅存档了示例输出。每个目录包含以下模拟文件: hapgen2_genotypes:该目录存储来自HAPGEN2的模拟基因型数据,限定为论文中描述的各基因分型阵列对应的数据集。 assoc:该目录存储来自PLINK2的模拟全基因组关联研究(Genome-Wide Association Study, GWAS)结果。受存储容量限制,仅包含一个模拟表型的数据。 meta_analysis与meta_analysis_grch38:该组目录存储所有meta分析配置下的meta分析结果(详见表S4,ST4_simulation_configurations.tsv)。受存储容量限制,仅包含一个模拟表型的数据。目录依据变异所属的参考基因组版本(GRCh37或GRCh38)进行划分。
创建时间:
2023-11-08
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