Supplementary files - ORs in teleost

Nucleotide sequences of the olfactory receptor genes are provided in FASTA format : Functional genes : ALL_species_functionnals.fa<br>Nucleotide sequences of the olfactory receptor genes are provided in FASTA format : Truncated / Edge genes : ALL_species_incomplete.fa<br>Nucleotide sequences of the olfactory receptor genes are provided in FASTA format : Pseudogenes : ALL_species_Pseudogenes.fa<br>Version of genomes used for this study, assembly sizes, expected genome sizes, BUSCO assessment results, olfactory receptor gene count, olfactory epithelium shape, ecological data as well as NOTUNG results are available in the Supplementary Table 1 : Supplementary_table.xlsx<br>BUSCO assessment results in graphic format : BUSCO_results.pdf<br>Phylogenetic trees (Newick format) used in this study are also available : 309 genomes : Species_Tree_fishtreeorg.nwk<br>Phylogenetic trees (Newick format) used in this study are also available : FigSupp11 : Rosette_tree.nwkPhylogenetic trees (Newick format) used in this study are also available : Fig2 : NodeLabeled_BUSCO90_species_tree.nwk<br>Species used for fig supp5 : Species_used_for_OR_phylogeny.txt<br>Simulation of gene decay recognition : Simulation_pseudogene_recognition.py

嗅觉受体基因的核苷酸序列以FASTA格式提供：功能基因文件为ALL_species_functionnals.fa<br>嗅觉受体基因的核苷酸序列以FASTA格式提供：截短/边缘基因文件为ALL_species_incomplete.fa<br>嗅觉受体基因的核苷酸序列以FASTA格式提供：假基因文件为ALL_species_Pseudogenes.fa<br>本研究使用的基因组版本、组装基因组大小、预期基因组大小、BUSCO（Benchmarking Universal Single-Copy Orthologs）评估结果、嗅觉受体基因数量、嗅觉上皮形态、生态学数据以及NOTUNG分析结果均收录于补充表1：Supplementary_table.xlsx<br>图形化BUSCO评估结果文件：BUSCO_results.pdf<br>本研究使用的系统发育树均为Newick格式，相关文件包括：对应309个基因组的物种树：Species_Tree_fishtreeorg.nwk<br>图补充材料11对应的罗塞塔树：Rosette_tree.nwk<br>图2对应的带节点标注的BUSCO90物种树：NodeLabeled_BUSCO90_species_tree.nwk<br>用于图补充材料5的物种列表文件：Species_used_for_OR_phylogeny.txt<br>基因衰变识别模拟脚本：Simulation_pseudogene_recognition.py