Source code, protocol, and Input/Output data. from Towards an information theoretic framework for MSA sub-sampling

Source code, protocol, and Input/Output data described in the manuscript. Here is the description of individual files in the zip: 1. File name: Outlier_index.c Legend/Caption: Source code of the program generated experimental data in the manuscript. 2. File name: PROTOCOL.txt Legend/Caption: Description of the experimental protocol 3. File name: tRNA_Mix_ThreeStructures Legend/Caption: Input MSA with 80 sequences fold to Structure A1, 15 sequences fold to Structure A2, and 5 sequences fold to Structure A3 4. File name: tRNA_Pure_Iteration_1.fa Legend/Caption: Remainder sequences when the first iteration process halts. 5. File name: tRNA_Removed_iteration_1 Legend/Caption: Removed sequences when the first iteration process halts. 6. File name: tRNA_Pure_iteration_2 Legend/Caption: Remainder sequences when the second iteration process halts. 7. File name: tRNA_Removed_iteration_2 Legend/Caption: Removed sequences when the second iteration process halts. 8. File name: tdev_threemix.csv Legend/Caption: Standard deviations of Q(x) in the first iteration 9. File name: stdev_threemix_ita2.csv Legend/Caption: Standard deviations of Q(x) in the second iteration 10. File name: removal_threemix.csv Legend/Caption: Sequence labels of sequential row removal in the first iteration 11. File name: removal_threemix_ita2.csv Legend/Caption: Sequence labels of sequential row removal in the second iteration

本手稿中涉及的源代码、实验方案以及输入/输出数据如下。以下为该压缩包内各单个文件的详细说明：
1. 文件名称：Outlier_index.c；说明/图例：本手稿中生成实验数据所用程序的源代码。
2. 文件名称：PROTOCOL.txt；说明/图例：实验方案的详细描述。
3. 文件名称：tRNA_Mix_ThreeStructures；说明/图例：输入多序列比对（Multiple Sequence Alignment, MSA）文件，其中80条序列折叠为结构A1、15条序列折叠为结构A2、5条序列折叠为结构A3。
4. 文件名称：tRNA_Pure_Iteration_1.fa；说明/图例：首轮迭代过程终止后保留的序列集合。
5. 文件名称：tRNA_Removed_iteration_1；说明/图例：首轮迭代过程终止后被移除的序列集合。
6. 文件名称：tRNA_Pure_iteration_2；说明/图例：第二轮迭代过程终止后保留的序列集合。
7. 文件名称：tRNA_Removed_iteration_2；说明/图例：第二轮迭代过程终止后被移除的序列集合。
8. 文件名称：tdev_threemix.csv；说明/图例：首轮迭代中Q(x)的标准差。
9. 文件名称：stdev_threemix_ita2.csv；说明/图例：第二轮迭代中Q(x)的标准差。
10. 文件名称：removal_threemix.csv；说明/图例：首轮迭代中按行依次移除的序列标签。
11. 文件名称：removal_threemix_ita2.csv；说明/图例：第二轮迭代中按行依次移除的序列标签。