pjhop/DNAmCrosshyb: hg38 and hg19 bisulfite-converted genomes (R .rds files)
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https://zenodo.org/record/4088019
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资源简介:
Bisulfite-converted genomes as used in the DNAmCrosshyb R package (github.com/pjhop/DNAmCrosshyb). Data is saved per chromosome in the ‘DNAString’ format as implemented in the Biostrings BioConductor package. The data is saved in the R rds file format and can be read using the ‘readRDS()’ function. Scripts used to generate these data can be found at https://github.com/pjhop/DNAmCrosshyb/blob/master/data-raw/bisulfite_convert_hg19.R and https://github.com/pjhop/DNAmCrosshyb/blob/master/data-raw/bisulfite_convert_hg38.R . See https://github.com/pjhop/DNAmCrosshyb for examples on how to map Illumina 450k/EPIC array probes to the bisulfite-converted genomes.
本数据集采用了DNAmCrosshyb R包(其配套代码仓库地址为github.com/pjhop/DNAmCrosshyb)中所使用的亚硫酸氢盐转化基因组(Bisulfite-converted genomes)。数据按染色体分别以Bioconductor项目的Biostrings软件包所实现的DNAString格式存储,采用R语言rds文件格式保存,可通过readRDS()函数读取。用于生成该数据集的脚本可在以下网址获取:https://github.com/pjhop/DNAmCrosshyb/blob/master/data-raw/bisulfite_convert_hg19.R 及 https://github.com/pjhop/DNAmCrosshyb/blob/master/data-raw/bisulfite_convert_hg38.R。如需了解将Illumina 450k/EPIC阵列探针比对至亚硫酸氢盐转化基因组的示例,请访问https://github.com/pjhop/DNAmCrosshyb。
创建时间:
2020-10-14



