MOESM2 of Assigning breed origin to alleles in crossbred animals

Additional file 2. Figure S1: Percentages of correct allelic assignments with a relaxation factor equal to 20 % when breeds are distantly related. Minimum (grey) and maximum (black) percentages of correct allelic assignments, for the chromosome 2 and averaged across A(BC) animals of distantly related breeds, as a function of the number of offset and non-offset phasing analyses selected based on a forward selection. Reported results are averages and SD across all replicates. Figure S2: Percentages of correct allelic assignments with a relaxation factor equal to 0 % when breeds are distantly related. Minimum (grey) and maximum (black) percentages of correct allelic assignments, for the chromosome 2 and averaged across A(BC) animals of distantly related breeds, as a function of the number of offset and non-offset phasing analyses selected based on a forward selection. Reported results are averages and SD across all replicates. Figure S3: Percentages of correct allelic assignments with a relaxation factor equal to 20 % when breeds are unrelated. Minimum (grey) and maximum (black) percentages of correct allelic assignments, for the chromosome 2 and averaged across A(BC) animals of unrelated breeds, as a function of the number of offset and non-offset phasing analyses selected based on a forward selection. Reported results are averages and SD across all replicates. Figure S4: Breed origin of the two alleles for each SNP of the chromosome SSC2 in 20 EF animals using BOA and the additional rules. Alleles from breeds E and F are in green and blue, respectively. Grey regions are unassigned alleles. Relaxation factor was equal to 0 %. Figure S5: Breed origin of the two alleles for each SNP of the chromosome SSC2 in 20 D(EF) animals using BOA and the additional rules. Alleles from breeds D, E, and F are in brown, green, and blue, respectively. Grey regions are unassigned alleles. Relaxation factor was equal to 0 %.

附加文件2。图S1：当品种亲缘关系较远时，放松因子（relaxation factor）为20%时的正确等位基因归属百分比。基于正向选择法选取偏移与非偏移分型分析的数量，针对2号染色体并对亲缘关系较远品种的A(BC)动物群体取均值，绘制正确等位基因归属百分比的最小值（灰色）与最大值（黑色）随分析数量的变化曲线。报告结果为所有重复实验的均值与标准差（Standard Deviation，SD）。
图S2：当品种亲缘关系较远时，放松因子为0%时的正确等位基因归属百分比。基于正向选择法选取偏移与非偏移分型分析的数量，针对2号染色体并对亲缘关系较远品种的A(BC)动物群体取均值，绘制正确等位基因归属百分比的最小值（灰色）与最大值（黑色）随分析数量的变化曲线。报告结果为所有重复实验的均值与标准差。
图S3：当品种无亲缘关系时，放松因子为20%时的正确等位基因归属百分比。基于正向选择法选取偏移与非偏移分型分析的数量，针对2号染色体并对无亲缘关系品种的A(BC)动物群体取均值，绘制正确等位基因归属百分比的最小值（灰色）与最大值（黑色）随分析数量的变化曲线。报告结果为所有重复实验的均值与标准差。
图S4：采用BOA与附加规则，对20头EF动物的SSC2染色体上每个单核苷酸多态性（Single Nucleotide Polymorphism，SNP）的两个等位基因进行品种归属标注。来自品种E与F的等位基因分别以绿色与蓝色标记，灰色区域代表未归属的等位基因。本次实验放松因子为0%。
图S5：采用BOA与附加规则，对20头D(EF)动物的SSC2染色体上每个单核苷酸多态性的两个等位基因进行品种归属标注。来自品种D、E与F的等位基因分别以棕色、绿色与蓝色标记，灰色区域代表未归属的等位基因。本次实验放松因子为0%。