Fish pathogens 16S rRNA database

Microbes recognized as fish pathogens, opportunist or otherwise given a role in fish health according to the book "Fish pathogens" by Austin and Austin 2007, were included in this 16S sequences RNA database. The given species were search for in GenBank, and the variety of sequences affiliating to one species was included, given that a specie gather sequences with >97% 16S RNA similarity (https://www.ezbiocloud.net/taxonomy), and that one specie may have several different operons. Emerging fish pathogens since 2007 were also included, based on "in house" knowledge and search on the internett. Totally 295 different species were included and their 6750 corresponding sequences. We collected this database as to align it towards microbial 16S rRNA libraries from land based aquaculture systems, to identify close relatives to fish pathogen microbes.

本16S rRNA序列数据库收录了由Austin与Austin于2007年出版的《Fish pathogens》（鱼类病原菌）一书中所定义的鱼类病原菌、机会致病菌，以及其他对鱼类健康具有调控或影响作用的微生物。所收录的物种均在GenBank中完成检索，隶属于同一物种的各类序列均被纳入数据库，聚类标准为：将16S rRNA相似性≥97%的序列归为同一物种（参考https://www.ezbiocloud.net/taxonomy），且单个物种可能存在多种不同的操纵子。基于内部研究资料与互联网检索结果，2007年以来新发现的鱼类病原菌也被纳入本数据库。最终共收录295个不同物种及其对应的6750条序列。本数据库的构建旨在与陆基水产养殖系统中的微生物16S rRNA文库进行比对，以鉴定与鱼类病原菌亲缘关系较近的微生物类群。