Qin_etal_2022_AEM_code_data

The MATLAB code and data for figures, tables, and results in the peer-reviewed paper "A deterministic model for understanding nonlinear viral dynamics in oysters" by Qubin Qin, Jian Shen, and Kimberly S. Reece, published in Applied and Environmental Microbiology in 2022. Data sets of experimental results used in the example case studies are from published papers: the in-host dynamics of OsHV-1 in two oyster families are from Segarra et al. (2014) and the in-host dynamics of NoV and TV are from Drouaz et al. (2015), respectively. Segarra A, Baillon L, Tourbiez D, Benabdelmouna A, Faury N, Bourgougnon N, Renault T. 2014. Ostreid herpesvirus type 1 replication and host response in adult Pacific oysters, Crassostrea gigas. Vet Res 45:103. Drouaz N, Schaeffer J, Farkas T, Le Pendu J, Le Guyader FS. 2015. Tulane virus as a potential surrogate to mimic norovirus behavior in oysters. Appl Environ Microbiol 81:5249–5256.

本数据集包含2022年发表于《应用与环境微生物学》（Applied and Environmental Microbiology）的同行评议论文《解析牡蛎非线性病毒动态的确定性模型》（作者：Qubin Qin、Jian Shen、Kimberly S. Reece）中所有图表、表格及结果对应的MATLAB代码与数据。

案例研究所用的实验结果数据集分别来自已发表文献：两个牡蛎家系的奥斯特氏疱疹病毒1型（Ostreid herpesvirus type 1, OsHV-1）宿主内动态数据取自Segarra等人（2014）的研究，诺如病毒（NoV）与杜兰病毒（Tulane virus, TV）的宿主内动态数据则分别来自Drouaz等人（2015）的研究。

Segarra A, Baillon L, Tourbiez D, Benabdelmouna A, Faury N, Bourgougnon N, Renault T. 2014. 太平洋牡蛎（Crassostrea gigas）成体的奥斯特氏疱疹病毒1型复制与宿主应答. 《兽医研究》（Vet Res）45:103.

Drouaz N, Schaeffer J, Farkas T, Le Pendu J, Le Guyader FS. 2015. 杜兰病毒作为模拟牡蛎体内诺如病毒行为的潜在替代株. 《应用与环境微生物学》（Appl Environ Microbiol）81:5249–5256.