Additional file 1 of The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter

Additional file 1: Table S1. Summary of sequencing data of Chimonanthus praecox and Calycanthus chinensis genome. Table S2. Estimation of genome size of Chimonanthus praecox and Calycanthus chinensis using K-mer analysis. Table S3. Statistic of Chimonanthus praecox and Calycanthus chinensis genome assembly. Table S4. Chromosomes length of wintersweet using HiC reads. Table S5. Assembly results of wintersweet using Hi-C. Table S6. Validation of genome assembly using BUSCO and CEGMA method. Table S7. Statistics of predicted protein-coding genes in Chimonanthus praecox and Calycanthus chinensis genome. Table S8. Functional annotation of the wintersweet protein-coding genes. Table S9. Annotation of conserved non-coding RNA genes in the wintersweet genome. Table S10. Wintersweet-specific gene families. Table S11. The list of expansion genes in wintersweet genome. Table S12. Annotation of repeat sequences in the wintersweet genome. Table S13. List of flowering-time and floral organ identity gene candidates in wintersweet. Table S14. The upregulated expressed genes involved in flowering networks in FBS1 stage compared with FBS2 stage. Table S15. Monthly temperatures in Wuhan (March 2017–February 2018). Table S16. Differently expressed genes between FBS6 and FBS7 stage. Table S17. List of Heat stress transcription factors (Hsf) and DEHYDRATION- RESPONSIVE ELEMENT BINDING PROTEIN (DREB) gene candidates identified in the wintersweet genome. Table S18.The candidate genes involved in the terpene synthesis pathways in wintersweet. Table S19. Terpene synthase family in wintersweet. Table S20. The candidate genes involved in the benzenoid/ phenylpropanoid synthesis pathways in wintersweet. Table S21. The list of transcription factor candidates involved in the regulation of VOCs synthesis in wintersweet. Table S22. Primers for CpTPS genes coloning and MADS-box B&C class genes Real-Time PCR. Table S23. Transporter candidates involved in benzenoid/phenylpropanoid synthesis pathways in wintersweet genome. Table S24. Tandem duplicated gene clusters in wintersweet genome.

附加文件1：表S1。蜡梅（Chimonanthus praecox）与夏蜡梅（Calycanthus chinensis）基因组测序数据汇总。
表S2。基于K-mer分析的蜡梅与夏蜡梅基因组大小估算。
表S3。蜡梅与夏蜡梅基因组组装统计。
表S4。基于Hi-C读段的蜡梅染色体长度统计。
表S5。蜡梅Hi-C组装结果。
表S6。基于BUSCO与CEGMA方法的基因组组装验证。
表S7。蜡梅与夏蜡梅基因组预测蛋白编码基因统计。
表S8。蜡梅蛋白编码基因功能注释。
表S9。蜡梅基因组保守非编码RNA基因注释。
表S10。蜡梅特异性基因家族。
表S11。蜡梅基因组扩张基因列表。
表S12。蜡梅基因组重复序列注释。
表S13。蜡梅开花时间与花器官特征候选基因列表。
表S14。相较于FBS2时期，FBS1时期开花调控网络中的上调表达基因。
表S15。2017年3月至2018年2月武汉月均气温。
表S16。FBS6与FBS7时期差异表达基因列表。
表S17。蜡梅基因组中鉴定的热激转录因子（Heat stress transcription factors, Hsf）与脱水应答元件结合蛋白（DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN, DREB）候选基因列表。
表S18。蜡梅萜类合成通路候选基因。
表S19。蜡梅萜合酶家族基因。
表S20。蜡梅苯类/苯丙烷类合成通路候选基因。
表S21。调控蜡梅挥发性有机化合物（Volatile Organic Compounds, VOCs）合成的转录因子候选列表。
表S22。CpTPS基因克隆与MADS-box B类及C类基因实时荧光定量PCR引物序列。
表S23。蜡梅基因组中参与苯类/苯丙烷类合成通路的转运蛋白候选基因。
表S24。蜡梅基因组串联重复基因簇列表。