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Aligned DNA sequence matrix for phylogenetic analyses in the article "A new species of spiny-backed tree frog, genus Osteocephalus (Anura: Hylidae), from the Yanachaga Chemillén National Park in central Peru"

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Mendeley Data2024-05-10 更新2024-06-29 收录
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资源简介:
Aligned DNA sequence matrix for phylogenetic analyses of the article "Systematics of Huicundomantis, a new subgenus of Pristimantis (Anura, Strabomantidae) with extraordinary cryptic diversity and eleven new species" The matrix is in NEXUS format and has 14791 bp and 38 terminals. Partitions are as follows: charset 12S_16S = 1-2442; charset mtGenome_other_genes = 2443-9180; charset nonCoding = 3132- 3138 4776- 4857 5203- 5214; charset codonPos1 = 2443-3130\3 3139-4774\3 4858-5200\3 5215-9178\3; charset codonPos2 = 2444-3131\3 3140-4775\3 4859-5201\3 5216-9179\3; charset codonPos3 = 2445-3129\3 3141-4773\3 4860-5202\3 5217-9180\3; charset 16S_ND1nonCoding = 9181- 9428 10390- 10506 ; charset 16S_ND1codonPos1 = 9429-10389\3; charset 16S_ND1codonPos2 = 9430-10387\3; charset 16S_ND1codonPos3 = 9431-10388\3; charset POMCcodonPos1 = 10507-11068\3; charset POMCcodonPos2 = 10508-11066\3; charset POMCcodonPos3 = 10509-11067\3; charset CO1codonPos1 = 11069-12608\3; charset CO1codonPos2 = 11070-12609\3; charset CO1codonPos3 = 11071-12610\3; charset CytbcodonPos1 = 12611-13757\3; charset CytbcodonPos2 = 12612-13758\3; charset CytbcodonPos3 = 12613-13759\3; charset ND2codonPos1 = 13760-14789\3; charset ND2codonPos2 = 13761-14790\3; charset ND2codonPos3 = 13762-14791\3;

本数据集为论文《Huicundomantis系统学:Pristimantis的新亚属(无尾目Anura、细趾蟾科Strabomantidae)——兼具非凡隐存多样性与11个新种》的系统发育分析所用的比对DNA序列矩阵。该矩阵采用NEXUS格式,包含14791个碱基对(bp)与38个终端类群(terminals)。序列分区的字符集设置如下:字符集(charset)12S_16S对应位点1–2442;字符集(charset)mtGenome_other_genes对应位点2443–9180;字符集(charset)nonCoding对应位点3132–3138、4776–4857、5203–5214;字符集(charset)codonPos1对应位点2443–31303、3139–47743、4858–52003、5215–91783;字符集(charset)codonPos2对应位点2444–31313、3140–47753、4859–52013、5216–91793;字符集(charset)codonPos3对应位点2445–31293、3141–47733、4860–52023、5217–91803;字符集(charset)16S_ND1nonCoding对应位点9181–9428、10390–10506;字符集(charset)16S_ND1codonPos1对应位点9429–103893;字符集(charset)16S_ND1codonPos2对应位点9430–103873;字符集(charset)16S_ND1codonPos3对应位点9431–103883;字符集(charset)POMCcodonPos1对应位点10507–110683;字符集(charset)POMCcodonPos2对应位点10508–110663;字符集(charset)POMCcodonPos3对应位点10509–110673;字符集(charset)CO1codonPos1对应位点11069–126083;字符集(charset)CO1codonPos2对应位点11070–126093;字符集(charset)CO1codonPos3对应位点11071–126103;字符集(charset)CytbcodonPos1对应位点12611–137573;字符集(charset)CytbcodonPos2对应位点12612–137583;字符集(charset)CytbcodonPos3对应位点12613–137593;字符集(charset)ND2codonPos1对应位点13760–147893;字符集(charset)ND2codonPos2对应位点13761–147903;字符集(charset)ND2codonPos3对应位点13762–147913
创建时间:
2023-06-28
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