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Gossypium raimondii strain:D5-2, D5-4, D5-31, and D5-53 Genome sequencing. Gossypium raimondii strain:D5-2, D5-4, D5-31, and D5-53

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NIAID Data Ecosystem2026-03-07 收录
下载链接:
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA202239
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Plant material was grown and gathered from greenhouses at Brigham Young University (D5-2, D5-31, A1-155, A2-34, A2-1011) and Iowa State University (D5-4, D5-53, A2-4, A1-73). DNA was extracted from 4 accessions of G. raimondii (D5-2, D5-4, D5-31, D5-53), 2 accessions of G. herbaceum (A1-73, A1-155), and 3 accessions of G. arboreum (A2-4, A2-34, A2-1011) using a Qiagen DNeasy plant kit. DNA libraries were prepared with the Illumina TruSeq V3 kit and sequenced by BGI, producing 100 bp paired-end reads. Approximately 40x genomic coverage was obtained for each library (Table 1).

本研究涉及的植物材料均种植并采集自杨百翰大学(Brigham Young University)与爱荷华州立大学(Iowa State University)的温室,其中杨百翰大学提供的材料编号为D5-2、D5-31、A1-155、A2-34、A2-1011,爱荷华州立大学提供的材料编号为D5-4、D5-53、A2-4、A1-73。随后,采用Qiagen DNeasy植物试剂盒,分别从4份雷蒙德氏棉(G. raimondii)种质材料(D5-2、D5-4、D5-31、D5-53)、2份草棉(G. herbaceum)种质材料(A1-73、A1-155)以及3份树棉(G. arboreum)种质材料中提取基因组DNA。使用Illumina TruSeq V3试剂盒构建DNA测序文库后,由BGI完成测序,产出100 bp双端读段(paired-end reads)。每个文库均获得约40倍的基因组测序覆盖度,相关信息详见表1。
创建时间:
2013-05-08
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